miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5296 3' -55.4 NC_001798.1 + 79393 0.66 0.921605
Target:  5'- --cGGGcGCgGAguccGCGCCCGCGccccugCUCg -3'
miRNA:   3'- uuuUCCuUGgCUa---CGCGGGCGCa-----GAG- -5'
5296 3' -55.4 NC_001798.1 + 79963 0.66 0.921605
Target:  5'- ---cGGAGCgGcgGCGCC-GCGUC-Cg -3'
miRNA:   3'- uuuuCCUUGgCuaCGCGGgCGCAGaG- -5'
5296 3' -55.4 NC_001798.1 + 4346 0.66 0.921605
Target:  5'- cAGAGGcGGCCGA-GCGCCgGCGg--- -3'
miRNA:   3'- uUUUCC-UUGGCUaCGCGGgCGCagag -5'
5296 3' -55.4 NC_001798.1 + 111892 0.66 0.921605
Target:  5'- --cGGGAGCCGGgggaggUGCGCCUGgGcCa- -3'
miRNA:   3'- uuuUCCUUGGCU------ACGCGGGCgCaGag -5'
5296 3' -55.4 NC_001798.1 + 152302 0.66 0.909851
Target:  5'- -uAGGGuaGACuCGAgacgGCgGCCCGCgGUCUCu -3'
miRNA:   3'- uuUUCC--UUG-GCUa---CG-CGGGCG-CAGAG- -5'
5296 3' -55.4 NC_001798.1 + 27552 0.66 0.909851
Target:  5'- cGGGGGGAGggGcgGCGCCCGCGg--- -3'
miRNA:   3'- -UUUUCCUUggCuaCGCGGGCGCagag -5'
5296 3' -55.4 NC_001798.1 + 87026 0.66 0.909851
Target:  5'- -cGAGGAgaucGCCaucGUGCGCUCGC-UCUCc -3'
miRNA:   3'- uuUUCCU----UGGc--UACGCGGGCGcAGAG- -5'
5296 3' -55.4 NC_001798.1 + 147488 0.66 0.908004
Target:  5'- -cGGGGGACCcaggcuccggggggGGgggGCGCCUGCGugugUCUCg -3'
miRNA:   3'- uuUUCCUUGG--------------CUa--CGCGGGCGC----AGAG- -5'
5296 3' -55.4 NC_001798.1 + 47607 0.66 0.897127
Target:  5'- -cGAGGAGCUGuacuAUG-GCCCG-GUCUCc -3'
miRNA:   3'- uuUUCCUUGGC----UACgCGGGCgCAGAG- -5'
5296 3' -55.4 NC_001798.1 + 39415 0.66 0.897127
Target:  5'- ---cGGGACCGggGCGCggccguCCGCGUg-- -3'
miRNA:   3'- uuuuCCUUGGCuaCGCG------GGCGCAgag -5'
5296 3' -55.4 NC_001798.1 + 137485 0.66 0.897127
Target:  5'- gGAGGGGGGCCGggGCaGagCCGCGUgCUg -3'
miRNA:   3'- -UUUUCCUUGGCuaCG-Cg-GGCGCA-GAg -5'
5296 3' -55.4 NC_001798.1 + 150386 0.66 0.897127
Target:  5'- ---cGGGcCCGGccGCGUCCGCG-CUCg -3'
miRNA:   3'- uuuuCCUuGGCUa-CGCGGGCGCaGAG- -5'
5296 3' -55.4 NC_001798.1 + 103744 0.66 0.897127
Target:  5'- ----cGGGCCGGgacuaaaGCCCGCGUUUCg -3'
miRNA:   3'- uuuucCUUGGCUacg----CGGGCGCAGAG- -5'
5296 3' -55.4 NC_001798.1 + 47862 0.66 0.890408
Target:  5'- --cGGGGGCCccguggGCGCCgGCGggcgCUCg -3'
miRNA:   3'- uuuUCCUUGGcua---CGCGGgCGCa---GAG- -5'
5296 3' -55.4 NC_001798.1 + 25723 0.66 0.890408
Target:  5'- ----uGGACCGgcGCcCCCGaCGUCUCg -3'
miRNA:   3'- uuuucCUUGGCuaCGcGGGC-GCAGAG- -5'
5296 3' -55.4 NC_001798.1 + 2575 0.66 0.890408
Target:  5'- ---cGGGGCgGGggGCGUCCGCGcggCUCu -3'
miRNA:   3'- uuuuCCUUGgCUa-CGCGGGCGCa--GAG- -5'
5296 3' -55.4 NC_001798.1 + 74739 0.67 0.883455
Target:  5'- uGGAGGGGACCc---CGCCCGCGaagccCUCg -3'
miRNA:   3'- -UUUUCCUUGGcuacGCGGGCGCa----GAG- -5'
5296 3' -55.4 NC_001798.1 + 10325 0.67 0.876273
Target:  5'- gGGGGGGAacgcugACCGGcgUGCguucgucacGCCCGCGUCg- -3'
miRNA:   3'- -UUUUCCU------UGGCU--ACG---------CGGGCGCAGag -5'
5296 3' -55.4 NC_001798.1 + 7572 0.67 0.876273
Target:  5'- --cGGGAuCCauaacGCGCCCGCGUC-Cg -3'
miRNA:   3'- uuuUCCUuGGcua--CGCGGGCGCAGaG- -5'
5296 3' -55.4 NC_001798.1 + 57542 0.67 0.868866
Target:  5'- -cGGGGGGCgGAUGCGuUCCGCGg--- -3'
miRNA:   3'- uuUUCCUUGgCUACGC-GGGCGCagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.