Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5296 | 3' | -55.4 | NC_001798.1 | + | 151614 | 0.68 | 0.837116 |
Target: 5'- --cGGGGGCCGGgccggggGCGUggCCGCGUCcaUCa -3' miRNA: 3'- uuuUCCUUGGCUa------CGCG--GGCGCAG--AG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 121569 | 0.68 | 0.845359 |
Target: 5'- --uGGGcGACC--UGUGCCCGCGUgCUCc -3' miRNA: 3'- uuuUCC-UUGGcuACGCGGGCGCA-GAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 85294 | 0.68 | 0.845359 |
Target: 5'- --cGGGGGCCGGggucCGCCCGCGg--- -3' miRNA: 3'- uuuUCCUUGGCUac--GCGGGCGCagag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 32777 | 0.67 | 0.853403 |
Target: 5'- --cGGGAGCagGgcGCGCCCGCGcCg- -3' miRNA: 3'- uuuUCCUUGg-CuaCGCGGGCGCaGag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 59556 | 0.67 | 0.853403 |
Target: 5'- gAGAGGGGGCUGGg--GCUCGCGUCg- -3' miRNA: 3'- -UUUUCCUUGGCUacgCGGGCGCAGag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 25877 | 0.67 | 0.860467 |
Target: 5'- ---cGGAcuggcccGCCGAcGgGCCCGUgGUCUCg -3' miRNA: 3'- uuuuCCU-------UGGCUaCgCGGGCG-CAGAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 123409 | 0.67 | 0.861241 |
Target: 5'- --cGGGAGCCGcgGC-CCCGCcggGUCa- -3' miRNA: 3'- uuuUCCUUGGCuaCGcGGGCG---CAGag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 5286 | 0.67 | 0.861241 |
Target: 5'- gAGGAGGAgcgaucgacGCCGccGCGCCC-CGgCUCg -3' miRNA: 3'- -UUUUCCU---------UGGCuaCGCGGGcGCaGAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 23549 | 0.67 | 0.861241 |
Target: 5'- -cGAGGAGgCGGggGUGCCCGCGa--- -3' miRNA: 3'- uuUUCCUUgGCUa-CGCGGGCGCagag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 57542 | 0.67 | 0.868866 |
Target: 5'- -cGGGGGGCgGAUGCGuUCCGCGg--- -3' miRNA: 3'- uuUUCCUUGgCUACGC-GGGCGCagag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 10325 | 0.67 | 0.876273 |
Target: 5'- gGGGGGGAacgcugACCGGcgUGCguucgucacGCCCGCGUCg- -3' miRNA: 3'- -UUUUCCU------UGGCU--ACG---------CGGGCGCAGag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 7572 | 0.67 | 0.876273 |
Target: 5'- --cGGGAuCCauaacGCGCCCGCGUC-Cg -3' miRNA: 3'- uuuUCCUuGGcua--CGCGGGCGCAGaG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 74739 | 0.67 | 0.883455 |
Target: 5'- uGGAGGGGACCc---CGCCCGCGaagccCUCg -3' miRNA: 3'- -UUUUCCUUGGcuacGCGGGCGCa----GAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 47862 | 0.66 | 0.890408 |
Target: 5'- --cGGGGGCCccguggGCGCCgGCGggcgCUCg -3' miRNA: 3'- uuuUCCUUGGcua---CGCGGgCGCa---GAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 2575 | 0.66 | 0.890408 |
Target: 5'- ---cGGGGCgGGggGCGUCCGCGcggCUCu -3' miRNA: 3'- uuuuCCUUGgCUa-CGCGGGCGCa--GAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 25723 | 0.66 | 0.890408 |
Target: 5'- ----uGGACCGgcGCcCCCGaCGUCUCg -3' miRNA: 3'- uuuucCUUGGCuaCGcGGGC-GCAGAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 47607 | 0.66 | 0.897127 |
Target: 5'- -cGAGGAGCUGuacuAUG-GCCCG-GUCUCc -3' miRNA: 3'- uuUUCCUUGGC----UACgCGGGCgCAGAG- -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 39415 | 0.66 | 0.897127 |
Target: 5'- ---cGGGACCGggGCGCggccguCCGCGUg-- -3' miRNA: 3'- uuuuCCUUGGCuaCGCG------GGCGCAgag -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 137485 | 0.66 | 0.897127 |
Target: 5'- gGAGGGGGGCCGggGCaGagCCGCGUgCUg -3' miRNA: 3'- -UUUUCCUUGGCuaCG-Cg-GGCGCA-GAg -5' |
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5296 | 3' | -55.4 | NC_001798.1 | + | 150386 | 0.66 | 0.897127 |
Target: 5'- ---cGGGcCCGGccGCGUCCGCG-CUCg -3' miRNA: 3'- uuuuCCUuGGCUa-CGCGGGCGCaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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