Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5296 | 5' | -61.5 | NC_001798.1 | + | 21628 | 1.12 | 0.000807 |
Target: 5'- uCCGAUCCGGGUGCGUCGGUGCCCCGCu -3' miRNA: 3'- -GGCUAGGCCCACGCAGCCACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 84598 | 0.81 | 0.10357 |
Target: 5'- gUCGGUCCcGGUGC--CGGUGCCCCGCc -3' miRNA: 3'- -GGCUAGGcCCACGcaGCCACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 43259 | 0.77 | 0.185589 |
Target: 5'- gCGAUcgCCGGGgGCGUC-GUGCCCUGCu -3' miRNA: 3'- gGCUA--GGCCCaCGCAGcCACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 5166 | 0.74 | 0.311009 |
Target: 5'- gCCGAU-CGGGUagauccuggcggccGCGUCGGUaGCCgCGCu -3' miRNA: 3'- -GGCUAgGCCCA--------------CGCAGCCA-CGGgGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 46003 | 0.74 | 0.280564 |
Target: 5'- -gGAUCCaGGGgaggGCGUgGGU-CCCCGCg -3' miRNA: 3'- ggCUAGG-CCCa---CGCAgCCAcGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 137416 | 0.74 | 0.306319 |
Target: 5'- uCgGGUCCGGGUcCGggacCGGgacccGCCCCGCg -3' miRNA: 3'- -GgCUAGGCCCAcGCa---GCCa----CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 123914 | 0.74 | 0.299715 |
Target: 5'- cCCGaAUCCGGG-GCGUgCuGUGCCCUGg -3' miRNA: 3'- -GGC-UAGGCCCaCGCA-GcCACGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 49125 | 0.74 | 0.306319 |
Target: 5'- aCGAUCUGGGcuucaGCG-CGG-GUCCCGCg -3' miRNA: 3'- gGCUAGGCCCa----CGCaGCCaCGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 70935 | 0.73 | 0.326799 |
Target: 5'- cCCGAU-CGGG-GCG-CGGUgGUCCCGCc -3' miRNA: 3'- -GGCUAgGCCCaCGCaGCCA-CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 98573 | 0.73 | 0.319861 |
Target: 5'- gCUGGUggCCGcGGUgGCGUCGGcgGCCCCGg -3' miRNA: 3'- -GGCUA--GGC-CCA-CGCAGCCa-CGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 134631 | 0.72 | 0.410323 |
Target: 5'- cCUGGUCgaGGuGUGCGaggUCGGccugcgGCCCCGCg -3' miRNA: 3'- -GGCUAGg-CC-CACGC---AGCCa-----CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 28187 | 0.72 | 0.370741 |
Target: 5'- cCCGAgcgagggCgGGGggaagGCGcCGGagGCCCCGCa -3' miRNA: 3'- -GGCUa------GgCCCa----CGCaGCCa-CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 149659 | 0.71 | 0.426874 |
Target: 5'- gCCGGgcgCCGGGU-CG-CGG-GCCCCGg -3' miRNA: 3'- -GGCUa--GGCCCAcGCaGCCaCGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 102222 | 0.71 | 0.452427 |
Target: 5'- gUCGA-CCGGGcGCGgcUCGGggcggGCCUCGCc -3' miRNA: 3'- -GGCUaGGCCCaCGC--AGCCa----CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 119436 | 0.71 | 0.426874 |
Target: 5'- gCGGUUCGGGUGUGUacguucgaCGGcGCCgCCGUu -3' miRNA: 3'- gGCUAGGCCCACGCA--------GCCaCGG-GGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 24709 | 0.71 | 0.452427 |
Target: 5'- cCCGcgcCCGGGgcccGCGggcgCGGccGCCCCGCc -3' miRNA: 3'- -GGCua-GGCCCa---CGCa---GCCa-CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 72142 | 0.71 | 0.418549 |
Target: 5'- aCCGGccacCCGGGccgGCGUCGG-GCCCaCGa -3' miRNA: 3'- -GGCUa---GGCCCa--CGCAGCCaCGGG-GCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 147212 | 0.7 | 0.505889 |
Target: 5'- uCCGGcCCGGGcccccgGCGgagcgCGGggGCCCCGg -3' miRNA: 3'- -GGCUaGGCCCa-----CGCa----GCCa-CGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 82379 | 0.7 | 0.469918 |
Target: 5'- gCGcAUCCGcGcGCGcUCGGUGCCCCaGCc -3' miRNA: 3'- gGC-UAGGCcCaCGC-AGCCACGGGG-CG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 39815 | 0.7 | 0.496781 |
Target: 5'- gUGGUCgCGGGUGgcggauCGUCGGcuCCCCGCc -3' miRNA: 3'- gGCUAG-GCCCAC------GCAGCCacGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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