miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5297 3' -70 NC_001798.1 + 135023 0.66 0.359878
Target:  5'- -gCCCCCGCgggcauggccggCCGUggCCUCggaggCGGCCGGCc -3'
miRNA:   3'- caGGGGGCG------------GGCA--GGGGg----GCCGGCCG- -5'
5297 3' -70 NC_001798.1 + 36390 0.66 0.359878
Target:  5'- uGUUCUgCGCggcgCCGgggCCCCCCuGCCGGg -3'
miRNA:   3'- -CAGGGgGCG----GGCa--GGGGGGcCGGCCg -5'
5297 3' -70 NC_001798.1 + 53836 0.66 0.359878
Target:  5'- -gUCgCCGCCUGggCCCCgCCGaucGCCGGUu -3'
miRNA:   3'- caGGgGGCGGGCa-GGGG-GGC---CGGCCG- -5'
5297 3' -70 NC_001798.1 + 81458 0.66 0.359878
Target:  5'- -gCCCCaCGCCCaaUCCggCCCCGGCCc-- -3'
miRNA:   3'- caGGGG-GCGGGc-AGG--GGGGCCGGccg -5'
5297 3' -70 NC_001798.1 + 90410 0.66 0.359878
Target:  5'- ---gCCgGCgCGUUCCCgCGGCCGGg -3'
miRNA:   3'- caggGGgCGgGCAGGGGgGCCGGCCg -5'
5297 3' -70 NC_001798.1 + 3861 0.66 0.359878
Target:  5'- uGUCgCCCaGCCCG-CCguacagcacgcgCCCCgggggcggggGGCCGGCc -3'
miRNA:   3'- -CAGgGGG-CGGGCaGG------------GGGG----------CCGGCCG- -5'
5297 3' -70 NC_001798.1 + 47962 0.66 0.359878
Target:  5'- --aCCCCGCCCGcggcaggcgaCCCgCCCaGGCCGa- -3'
miRNA:   3'- cagGGGGCGGGCa---------GGG-GGG-CCGGCcg -5'
5297 3' -70 NC_001798.1 + 85304 0.66 0.359878
Target:  5'- gGUCCgcccgcggCCCGCCCGcagaCCCCaCGGCagaGGg -3'
miRNA:   3'- -CAGG--------GGGCGGGCag--GGGG-GCCGg--CCg -5'
5297 3' -70 NC_001798.1 + 101412 0.66 0.359878
Target:  5'- -aCCCCaaaccaacCCCGUCUCCCUGcGaCCGGUc -3'
miRNA:   3'- caGGGGgc------GGGCAGGGGGGC-C-GGCCG- -5'
5297 3' -70 NC_001798.1 + 105073 0.66 0.359878
Target:  5'- -aCUCCCGacgaaCCCGcggCCCCgCGGCCcGCg -3'
miRNA:   3'- caGGGGGC-----GGGCa--GGGGgGCCGGcCG- -5'
5297 3' -70 NC_001798.1 + 116438 0.66 0.359878
Target:  5'- -gCCgCCGacgaCCGgCCgCaCCGGCCGGCc -3'
miRNA:   3'- caGGgGGCg---GGCaGGgG-GGCCGGCCG- -5'
5297 3' -70 NC_001798.1 + 100227 0.66 0.35916
Target:  5'- cGUCUCCacgugcgUGCCCGUCgCCCCGGacaacgugaUCGuGCa -3'
miRNA:   3'- -CAGGGG-------GCGGGCAGgGGGGCC---------GGC-CG- -5'
5297 3' -70 NC_001798.1 + 93241 0.66 0.355586
Target:  5'- -gCCCCUGCuuGagggccaggaaacgCCCgcggCCCGcGCCGGCg -3'
miRNA:   3'- caGGGGGCGggCa-------------GGG----GGGC-CGGCCG- -5'
5297 3' -70 NC_001798.1 + 32077 0.66 0.352745
Target:  5'- -gCCCCCGUcggcgucuCCGUCgUCCCaGGCC-GCg -3'
miRNA:   3'- caGGGGGCG--------GGCAGgGGGG-CCGGcCG- -5'
5297 3' -70 NC_001798.1 + 147346 0.66 0.352745
Target:  5'- cGUCUUCC-CCCGUCCCgCCGcGCCc-- -3'
miRNA:   3'- -CAGGGGGcGGGCAGGGgGGC-CGGccg -5'
5297 3' -70 NC_001798.1 + 126990 0.66 0.350625
Target:  5'- cGUCCUCgugaUGCUgcgaucggacgcggUGUCgCUCCGGCCGGCc -3'
miRNA:   3'- -CAGGGG----GCGG--------------GCAGgGGGGCCGGCCG- -5'
5297 3' -70 NC_001798.1 + 56454 0.66 0.345713
Target:  5'- --aUUCCGUCCGgguaUCCCgCCaGCCGGCa -3'
miRNA:   3'- cagGGGGCGGGC----AGGGgGGcCGGCCG- -5'
5297 3' -70 NC_001798.1 + 35952 0.66 0.345713
Target:  5'- uUCgCCCGCCCGccUCgCCCCGGaCCc-- -3'
miRNA:   3'- cAGgGGGCGGGC--AGgGGGGCC-GGccg -5'
5297 3' -70 NC_001798.1 + 2108 0.66 0.345713
Target:  5'- -gCCCCCggcgcgGCCCGcggccaggUCCUcgCCCGGCagCGGCg -3'
miRNA:   3'- caGGGGG------CGGGC--------AGGG--GGGCCG--GCCG- -5'
5297 3' -70 NC_001798.1 + 32218 0.66 0.345713
Target:  5'- cUCCUCCGCCUcUUCCUCUgcgggcggGGCUGGUg -3'
miRNA:   3'- cAGGGGGCGGGcAGGGGGG--------CCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.