miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5298 5' -66.5 NC_001798.1 + 15274 0.66 0.475928
Target:  5'- gGUGCcccgGGUUCCGGGCGuggcgguGGUCgCGGCg -3'
miRNA:   3'- gCACGcg--CCGGGGUCCGC-------CCAG-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 32364 0.66 0.468113
Target:  5'- --aGgGCGGCCCCGaGCccGGGgcccgcgacCCGGCg -3'
miRNA:   3'- gcaCgCGCCGGGGUcCG--CCCa--------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 28610 0.66 0.468113
Target:  5'- cCGcGCGCcuGGCCCgAcGG-GGGUCCugGGCg -3'
miRNA:   3'- -GCaCGCG--CCGGGgU-CCgCCCAGG--CCG- -5'
5298 5' -66.5 NC_001798.1 + 137354 0.66 0.468113
Target:  5'- -cUGCGUucgacGCCCCAGcCcuGGUCCGGCg -3'
miRNA:   3'- gcACGCGc----CGGGGUCcGc-CCAGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 52199 0.66 0.468113
Target:  5'- aCGUGCugGCGGUCCU-GGCGgagcagacGGUCCaguGGCu -3'
miRNA:   3'- -GCACG--CGCCGGGGuCCGC--------CCAGG---CCG- -5'
5298 5' -66.5 NC_001798.1 + 23899 0.66 0.468113
Target:  5'- aGgagGCGCGGgCCCgguucgAGGCcucGGGcgccCCGGCg -3'
miRNA:   3'- gCa--CGCGCCgGGG------UCCG---CCCa---GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 70309 0.66 0.467248
Target:  5'- uCGgGCGCGGCggucggCCCGGcggaggcGCGGGcgugCUGGCa -3'
miRNA:   3'- -GCaCGCGCCG------GGGUC-------CGCCCa---GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 57220 0.66 0.46294
Target:  5'- --gGCGCugucauacaccaguuGGcCCCCGGGCGGGgCCGa- -3'
miRNA:   3'- gcaCGCG---------------CC-GGGGUCCGCCCaGGCcg -5'
5298 5' -66.5 NC_001798.1 + 90839 0.66 0.459507
Target:  5'- gCGUGaUGaCGGUCCC-GGCGGGcgugaUGGCg -3'
miRNA:   3'- -GCAC-GC-GCCGGGGuCCGCCCag---GCCG- -5'
5298 5' -66.5 NC_001798.1 + 23659 0.66 0.459507
Target:  5'- --aGCGCcgccgGGCCCgCGcGGCGGuGgCCGGCc -3'
miRNA:   3'- gcaCGCG-----CCGGG-GU-CCGCC-CaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 123413 0.66 0.459507
Target:  5'- --aGcCGCGGCCCC-GcCGGGUCaccggGGCg -3'
miRNA:   3'- gcaC-GCGCCGGGGuCcGCCCAGg----CCG- -5'
5298 5' -66.5 NC_001798.1 + 34587 0.66 0.459507
Target:  5'- aCGcgGCGCGGCgUCucGGUGGGacgCgGGCa -3'
miRNA:   3'- -GCa-CGCGCCGgGGu-CCGCCCa--GgCCG- -5'
5298 5' -66.5 NC_001798.1 + 78578 0.66 0.454385
Target:  5'- cCGcGCGCGaGCgCCGGGCccagaucgaggccgaGGGcCUGGCc -3'
miRNA:   3'- -GCaCGCGC-CGgGGUCCG---------------CCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 11634 0.66 0.450987
Target:  5'- gCGgGCGCGGgcgucccuguguCCCCggGGGCGGGggUCGGg -3'
miRNA:   3'- -GCaCGCGCC------------GGGG--UCCGCCCa-GGCCg -5'
5298 5' -66.5 NC_001798.1 + 53241 0.66 0.450987
Target:  5'- --aGCGCGGCCgUGGGCGuccUgCGGCa -3'
miRNA:   3'- gcaCGCGCCGGgGUCCGCcc-AgGCCG- -5'
5298 5' -66.5 NC_001798.1 + 83656 0.66 0.450987
Target:  5'- -aUGUGCGGCUCgCGGGCGucuGGgaugcaCUGGCg -3'
miRNA:   3'- gcACGCGCCGGG-GUCCGC---CCa-----GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 152509 0.66 0.450987
Target:  5'- --cGCGC-GCCCC-GGCGGGggCGGa -3'
miRNA:   3'- gcaCGCGcCGGGGuCCGCCCagGCCg -5'
5298 5' -66.5 NC_001798.1 + 143372 0.66 0.442554
Target:  5'- cCGU-CGagaGGCCCCAcGuGCGcGUCCGGUg -3'
miRNA:   3'- -GCAcGCg--CCGGGGU-C-CGCcCAGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 113633 0.66 0.441716
Target:  5'- -cUGCGCGGCCggcgccgCCAuGUGGGUggCGGCg -3'
miRNA:   3'- gcACGCGCCGG-------GGUcCGCCCAg-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 5575 0.67 0.434211
Target:  5'- --cGC-CGGCCCCAaa-GGGgCCGGCg -3'
miRNA:   3'- gcaCGcGCCGGGGUccgCCCaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.