Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5299 | 3' | -54.5 | NC_001798.1 | + | 118488 | 0.66 | 0.954863 |
Target: 5'- uCGUCCCGGuuGCguugCGCuuUCCGGCCc- -3' miRNA: 3'- uGCAGGGUU--UGa---GUGugAGGUCGGcu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 80773 | 0.66 | 0.954863 |
Target: 5'- gACGcUCUUcGACUCGCGCcCCGGCgGGc -3' miRNA: 3'- -UGC-AGGGuUUGAGUGUGaGGUCGgCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 77431 | 0.66 | 0.954863 |
Target: 5'- gGCG-CgCCGGGCcUGCGC-CCAGCCGGa -3' miRNA: 3'- -UGCaG-GGUUUGaGUGUGaGGUCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 121980 | 0.66 | 0.950818 |
Target: 5'- cGCGcCCCAAGCaCGCGgcCUCCGGCg-- -3' miRNA: 3'- -UGCaGGGUUUGaGUGU--GAGGUCGgcu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 109690 | 0.66 | 0.950818 |
Target: 5'- cCGUUCCuGGCgggCGCGCcCuCGGCCGAg -3' miRNA: 3'- uGCAGGGuUUGa--GUGUGaG-GUCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 121780 | 0.66 | 0.946538 |
Target: 5'- gGCGUCCuCGGuCUCGgGCggggccgggCCGGCCGu -3' miRNA: 3'- -UGCAGG-GUUuGAGUgUGa--------GGUCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 29022 | 0.66 | 0.946538 |
Target: 5'- cGCGggCCCGGACUC-CGCcCCGGCg-- -3' miRNA: 3'- -UGCa-GGGUUUGAGuGUGaGGUCGgcu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 32096 | 0.66 | 0.946538 |
Target: 5'- uCGUCCCAGGC-CGCGgUCgCcGCCGc -3' miRNA: 3'- uGCAGGGUUUGaGUGUgAG-GuCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 72655 | 0.66 | 0.945653 |
Target: 5'- gGCGgCCCAGGuCUCGCACgaggguaacgugCUGGCCGu -3' miRNA: 3'- -UGCaGGGUUU-GAGUGUGa-----------GGUCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 46292 | 0.66 | 0.942019 |
Target: 5'- uGCGUCCUc--CUCGCGCUuuGGCaGAa -3' miRNA: 3'- -UGCAGGGuuuGAGUGUGAggUCGgCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 105255 | 0.66 | 0.942019 |
Target: 5'- gGCGUCCCGcGCggcaucCGCcuCUUCGGCCGc -3' miRNA: 3'- -UGCAGGGUuUGa-----GUGu-GAGGUCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 102269 | 0.66 | 0.939193 |
Target: 5'- -aGUCCCGguccGGCUCGucacggccgcagucgUACUCCGGCUGc -3' miRNA: 3'- ugCAGGGU----UUGAGU---------------GUGAGGUCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 103578 | 0.67 | 0.927013 |
Target: 5'- gGCGcCuCCAAccGCUCGCGCauuUCC-GCCGAc -3' miRNA: 3'- -UGCaG-GGUU--UGAGUGUG---AGGuCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 81519 | 0.67 | 0.921524 |
Target: 5'- cACGUCCCAGua-CGCACcgcggcccaUCgGGCCGGc -3' miRNA: 3'- -UGCAGGGUUugaGUGUG---------AGgUCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 22810 | 0.67 | 0.909816 |
Target: 5'- gGCGgcCCCGGAuCUC-CGgaUCCAGCCGAc -3' miRNA: 3'- -UGCa-GGGUUU-GAGuGUg-AGGUCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 143812 | 0.68 | 0.883536 |
Target: 5'- -aGgCCCGGGCggCGCGCggCCAGCCGu -3' miRNA: 3'- ugCaGGGUUUGa-GUGUGa-GGUCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 126238 | 0.68 | 0.883536 |
Target: 5'- cGCGUCCU--ACaUACACUCCcucAGCCGc -3' miRNA: 3'- -UGCAGGGuuUGaGUGUGAGG---UCGGCu -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 53181 | 0.68 | 0.876387 |
Target: 5'- gGCGUcCCCGAGCggCGCAuCUUC-GCCGGg -3' miRNA: 3'- -UGCA-GGGUUUGa-GUGU-GAGGuCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 21707 | 0.68 | 0.869017 |
Target: 5'- cCGUCCCGGuCUC-CGCcgCgCAGCCGGu -3' miRNA: 3'- uGCAGGGUUuGAGuGUGa-G-GUCGGCU- -5' |
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5299 | 3' | -54.5 | NC_001798.1 | + | 59913 | 0.68 | 0.868268 |
Target: 5'- aGC-UCCCGgucgaggAACcCGgGCUCCGGCCGAg -3' miRNA: 3'- -UGcAGGGU-------UUGaGUgUGAGGUCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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