miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 3' -54.5 NC_001798.1 + 77431 0.66 0.954863
Target:  5'- gGCG-CgCCGGGCcUGCGC-CCAGCCGGa -3'
miRNA:   3'- -UGCaG-GGUUUGaGUGUGaGGUCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 118488 0.66 0.954863
Target:  5'- uCGUCCCGGuuGCguugCGCuuUCCGGCCc- -3'
miRNA:   3'- uGCAGGGUU--UGa---GUGugAGGUCGGcu -5'
5299 3' -54.5 NC_001798.1 + 80773 0.66 0.954863
Target:  5'- gACGcUCUUcGACUCGCGCcCCGGCgGGc -3'
miRNA:   3'- -UGC-AGGGuUUGAGUGUGaGGUCGgCU- -5'
5299 3' -54.5 NC_001798.1 + 121980 0.66 0.950818
Target:  5'- cGCGcCCCAAGCaCGCGgcCUCCGGCg-- -3'
miRNA:   3'- -UGCaGGGUUUGaGUGU--GAGGUCGgcu -5'
5299 3' -54.5 NC_001798.1 + 109690 0.66 0.950818
Target:  5'- cCGUUCCuGGCgggCGCGCcCuCGGCCGAg -3'
miRNA:   3'- uGCAGGGuUUGa--GUGUGaG-GUCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 32096 0.66 0.946538
Target:  5'- uCGUCCCAGGC-CGCGgUCgCcGCCGc -3'
miRNA:   3'- uGCAGGGUUUGaGUGUgAG-GuCGGCu -5'
5299 3' -54.5 NC_001798.1 + 29022 0.66 0.946538
Target:  5'- cGCGggCCCGGACUC-CGCcCCGGCg-- -3'
miRNA:   3'- -UGCa-GGGUUUGAGuGUGaGGUCGgcu -5'
5299 3' -54.5 NC_001798.1 + 121780 0.66 0.946538
Target:  5'- gGCGUCCuCGGuCUCGgGCggggccgggCCGGCCGu -3'
miRNA:   3'- -UGCAGG-GUUuGAGUgUGa--------GGUCGGCu -5'
5299 3' -54.5 NC_001798.1 + 72655 0.66 0.945653
Target:  5'- gGCGgCCCAGGuCUCGCACgaggguaacgugCUGGCCGu -3'
miRNA:   3'- -UGCaGGGUUU-GAGUGUGa-----------GGUCGGCu -5'
5299 3' -54.5 NC_001798.1 + 46292 0.66 0.942019
Target:  5'- uGCGUCCUc--CUCGCGCUuuGGCaGAa -3'
miRNA:   3'- -UGCAGGGuuuGAGUGUGAggUCGgCU- -5'
5299 3' -54.5 NC_001798.1 + 105255 0.66 0.942019
Target:  5'- gGCGUCCCGcGCggcaucCGCcuCUUCGGCCGc -3'
miRNA:   3'- -UGCAGGGUuUGa-----GUGu-GAGGUCGGCu -5'
5299 3' -54.5 NC_001798.1 + 102269 0.66 0.939193
Target:  5'- -aGUCCCGguccGGCUCGucacggccgcagucgUACUCCGGCUGc -3'
miRNA:   3'- ugCAGGGU----UUGAGU---------------GUGAGGUCGGCu -5'
5299 3' -54.5 NC_001798.1 + 103578 0.67 0.927013
Target:  5'- gGCGcCuCCAAccGCUCGCGCauuUCC-GCCGAc -3'
miRNA:   3'- -UGCaG-GGUU--UGAGUGUG---AGGuCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 81519 0.67 0.921524
Target:  5'- cACGUCCCAGua-CGCACcgcggcccaUCgGGCCGGc -3'
miRNA:   3'- -UGCAGGGUUugaGUGUG---------AGgUCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 22810 0.67 0.909816
Target:  5'- gGCGgcCCCGGAuCUC-CGgaUCCAGCCGAc -3'
miRNA:   3'- -UGCa-GGGUUU-GAGuGUg-AGGUCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 126238 0.68 0.883536
Target:  5'- cGCGUCCU--ACaUACACUCCcucAGCCGc -3'
miRNA:   3'- -UGCAGGGuuUGaGUGUGAGG---UCGGCu -5'
5299 3' -54.5 NC_001798.1 + 143812 0.68 0.883536
Target:  5'- -aGgCCCGGGCggCGCGCggCCAGCCGu -3'
miRNA:   3'- ugCaGGGUUUGa-GUGUGa-GGUCGGCu -5'
5299 3' -54.5 NC_001798.1 + 53181 0.68 0.876387
Target:  5'- gGCGUcCCCGAGCggCGCAuCUUC-GCCGGg -3'
miRNA:   3'- -UGCA-GGGUUUGa-GUGU-GAGGuCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 21707 0.68 0.869017
Target:  5'- cCGUCCCGGuCUC-CGCcgCgCAGCCGGu -3'
miRNA:   3'- uGCAGGGUUuGAGuGUGa-G-GUCGGCU- -5'
5299 3' -54.5 NC_001798.1 + 59913 0.68 0.868268
Target:  5'- aGC-UCCCGgucgaggAACcCGgGCUCCGGCCGAg -3'
miRNA:   3'- -UGcAGGGU-------UUGaGUgUGAGGUCGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.