miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5300 5' -59.2 NC_001798.1 + 36048 0.66 0.835486
Target:  5'- cGGCGGUGgucggcguGCUgCCGGAgGCUgCGGGCg -3'
miRNA:   3'- cCUGCUAC--------UGGgGGUCU-UGGgGCCCG- -5'
5300 5' -59.2 NC_001798.1 + 39225 0.66 0.835486
Target:  5'- ---gGGUGGCCagcaCgGGAGCCCagGGGCu -3'
miRNA:   3'- ccugCUACUGGg---GgUCUUGGGg-CCCG- -5'
5300 5' -59.2 NC_001798.1 + 123592 0.66 0.835486
Target:  5'- ---aGGUGGCCCuuCCGGAccccgACCCCGaGCg -3'
miRNA:   3'- ccugCUACUGGG--GGUCU-----UGGGGCcCG- -5'
5300 5' -59.2 NC_001798.1 + 39496 0.66 0.835486
Target:  5'- uGGcCGcgGGCCCCCGGAgACgUCGaGCu -3'
miRNA:   3'- -CCuGCuaCUGGGGGUCU-UGgGGCcCG- -5'
5300 5' -59.2 NC_001798.1 + 69454 0.66 0.835486
Target:  5'- gGGGCccUGuCCCCCAaAAgCaCCGGGCc -3'
miRNA:   3'- -CCUGcuACuGGGGGUcUUgG-GGCCCG- -5'
5300 5' -59.2 NC_001798.1 + 22387 0.66 0.835486
Target:  5'- uGGGgGcgGAaCCCCGGcGAgCCgGGGCg -3'
miRNA:   3'- -CCUgCuaCUgGGGGUC-UUgGGgCCCG- -5'
5300 5' -59.2 NC_001798.1 + 134187 0.66 0.833092
Target:  5'- -cGCGAcGGCCCCggccgccuccccgcUGGAGCCCCuGGGg -3'
miRNA:   3'- ccUGCUaCUGGGG--------------GUCUUGGGG-CCCg -5'
5300 5' -59.2 NC_001798.1 + 29832 0.66 0.833092
Target:  5'- ------aGACCCCCGGcacggugagagggcGAcCCCCGGGUc -3'
miRNA:   3'- ccugcuaCUGGGGGUC--------------UU-GGGGCCCG- -5'
5300 5' -59.2 NC_001798.1 + 637 0.66 0.827447
Target:  5'- ---aGGUcaGAgCCCCAGAcCCCCcgcGGGCg -3'
miRNA:   3'- ccugCUA--CUgGGGGUCUuGGGG---CCCG- -5'
5300 5' -59.2 NC_001798.1 + 33190 0.66 0.827447
Target:  5'- gGGcACGAgaagccGCCCCCAc--CCCCGaGGCc -3'
miRNA:   3'- -CC-UGCUac----UGGGGGUcuuGGGGC-CCG- -5'
5300 5' -59.2 NC_001798.1 + 11214 0.66 0.827447
Target:  5'- uGGACcuaGACCUCUuggGGGGCCgUCGGGCc -3'
miRNA:   3'- -CCUGcuaCUGGGGG---UCUUGG-GGCCCG- -5'
5300 5' -59.2 NC_001798.1 + 29382 0.66 0.827447
Target:  5'- gGGGCGGgcACCaCUCAGGGCCgCGccGGCg -3'
miRNA:   3'- -CCUGCUacUGG-GGGUCUUGGgGC--CCG- -5'
5300 5' -59.2 NC_001798.1 + 104590 0.66 0.827447
Target:  5'- gGGaACGucgcccggGGCCgCCGGuagcACCCCGuGGCg -3'
miRNA:   3'- -CC-UGCua------CUGGgGGUCu---UGGGGC-CCG- -5'
5300 5' -59.2 NC_001798.1 + 54369 0.66 0.827447
Target:  5'- cGGCGuccGGCCCaCCGGGggGCCgCGGcGCg -3'
miRNA:   3'- cCUGCua-CUGGG-GGUCU--UGGgGCC-CG- -5'
5300 5' -59.2 NC_001798.1 + 26221 0.66 0.827447
Target:  5'- cGGGCGAcgccaUGGCgCCCGGcGCgCCGGa- -3'
miRNA:   3'- -CCUGCU-----ACUGgGGGUCuUGgGGCCcg -5'
5300 5' -59.2 NC_001798.1 + 93473 0.66 0.819244
Target:  5'- -cGCGAgGGCCaCguGGugCCCGGGUa -3'
miRNA:   3'- ccUGCUaCUGGgGguCUugGGGCCCG- -5'
5300 5' -59.2 NC_001798.1 + 79532 0.66 0.819244
Target:  5'- cGGCGGaGACCC--GGGGCCCCuGGUg -3'
miRNA:   3'- cCUGCUaCUGGGggUCUUGGGGcCCG- -5'
5300 5' -59.2 NC_001798.1 + 53919 0.66 0.819244
Target:  5'- uGGAcCGcgGGCCCagCGGcACCaCGGGCu -3'
miRNA:   3'- -CCU-GCuaCUGGGg-GUCuUGGgGCCCG- -5'
5300 5' -59.2 NC_001798.1 + 23857 0.66 0.819244
Target:  5'- uGGGCGAcagccgccccGGCCUCUggGGGGCgCCCGaGGCg -3'
miRNA:   3'- -CCUGCUa---------CUGGGGG--UCUUG-GGGC-CCG- -5'
5300 5' -59.2 NC_001798.1 + 2609 0.66 0.819244
Target:  5'- gGGGCGcgGggcGCCgCCCGGcggcGCCCUggccgGGGCg -3'
miRNA:   3'- -CCUGCuaC---UGG-GGGUCu---UGGGG-----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.