miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 3' -53.7 NC_001798.1 + 74043 0.66 0.958255
Target:  5'- -cGCGCGGCggccugcguugcgUGUUUUCGCgGGUgUACGg -3'
miRNA:   3'- cuUGCGUCG-------------ACAGAAGCGaCCG-AUGC- -5'
5301 3' -53.7 NC_001798.1 + 96945 0.66 0.95476
Target:  5'- cGAGCGCucuguguGCUGgaccaggCGCUGGC-GCGg -3'
miRNA:   3'- -CUUGCGu------CGACagaa---GCGACCGaUGC- -5'
5301 3' -53.7 NC_001798.1 + 43647 0.66 0.95476
Target:  5'- gGGGCGagGGCUGcUCcgUGCUGGCcGCGg -3'
miRNA:   3'- -CUUGCg-UCGAC-AGaaGCGACCGaUGC- -5'
5301 3' -53.7 NC_001798.1 + 8875 0.66 0.946301
Target:  5'- cGGACGCGGaaGgg--CGCUGGCggaggGCGg -3'
miRNA:   3'- -CUUGCGUCgaCagaaGCGACCGa----UGC- -5'
5301 3' -53.7 NC_001798.1 + 134692 0.67 0.936862
Target:  5'- cGggUGCuGCUG-CcgCGC-GGCUACGa -3'
miRNA:   3'- -CuuGCGuCGACaGaaGCGaCCGAUGC- -5'
5301 3' -53.7 NC_001798.1 + 146702 0.67 0.926426
Target:  5'- -cGCGCAGCUGagugCUcUGC-GGUUGCGg -3'
miRNA:   3'- cuUGCGUCGACa---GAaGCGaCCGAUGC- -5'
5301 3' -53.7 NC_001798.1 + 125629 0.67 0.920833
Target:  5'- cGGACGcCAGCUG-CUggccaaacaUCGCgGGCgagGCGg -3'
miRNA:   3'- -CUUGC-GUCGACaGA---------AGCGaCCGa--UGC- -5'
5301 3' -53.7 NC_001798.1 + 139151 0.67 0.920833
Target:  5'- --cUGCAGCUGUCggguggcggccUCGCUGGaccggACGa -3'
miRNA:   3'- cuuGCGUCGACAGa----------AGCGACCga---UGC- -5'
5301 3' -53.7 NC_001798.1 + 70310 0.67 0.914989
Target:  5'- cGGGCGCGGCgGUCggcccggCGgaGGCgcggGCGu -3'
miRNA:   3'- -CUUGCGUCGaCAGaa-----GCgaCCGa---UGC- -5'
5301 3' -53.7 NC_001798.1 + 150638 0.68 0.908896
Target:  5'- -cGCGgGGCUGUC-UCGCgGGggGCGu -3'
miRNA:   3'- cuUGCgUCGACAGaAGCGaCCgaUGC- -5'
5301 3' -53.7 NC_001798.1 + 25641 0.68 0.902556
Target:  5'- cGAGCGCggcgGGCUGUCcugccUGCUGGCgGCc -3'
miRNA:   3'- -CUUGCG----UCGACAGaa---GCGACCGaUGc -5'
5301 3' -53.7 NC_001798.1 + 36042 0.68 0.895972
Target:  5'- gGGugGCGGCggugGUCggcgUGCUgccggaGGCUGCGg -3'
miRNA:   3'- -CUugCGUCGa---CAGaa--GCGA------CCGAUGC- -5'
5301 3' -53.7 NC_001798.1 + 39103 0.68 0.895972
Target:  5'- cAugGCcuuGGCUGUCgaCGCggcccgcggguUGGCUGCGa -3'
miRNA:   3'- cUugCG---UCGACAGaaGCG-----------ACCGAUGC- -5'
5301 3' -53.7 NC_001798.1 + 72572 0.69 0.843394
Target:  5'- aAGCGCGcGCUgGUCgcgucccUCGCggGGCUGCGg -3'
miRNA:   3'- cUUGCGU-CGA-CAGa------AGCGa-CCGAUGC- -5'
5301 3' -53.7 NC_001798.1 + 25412 0.7 0.817714
Target:  5'- -cGCGCGcGCUGgCcUCGCUGGCcGCGc -3'
miRNA:   3'- cuUGCGU-CGACaGaAGCGACCGaUGC- -5'
5301 3' -53.7 NC_001798.1 + 122390 0.73 0.639193
Target:  5'- --cCGCGGCUGUCcUCcgaGCUGGCcACGg -3'
miRNA:   3'- cuuGCGUCGACAGaAG---CGACCGaUGC- -5'
5301 3' -53.7 NC_001798.1 + 4199 0.74 0.61824
Target:  5'- --cCGCGGCgugGUCUgcggCGCUGGCggggGCGc -3'
miRNA:   3'- cuuGCGUCGa--CAGAa---GCGACCGa---UGC- -5'
5301 3' -53.7 NC_001798.1 + 19309 1.1 0.003939
Target:  5'- gGAACGCAGCUGUCUUCGCUGGCUACGg -3'
miRNA:   3'- -CUUGCGUCGACAGAAGCGACCGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.