miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 132327 0.68 0.84028
Target:  5'- aCUCGCuc---ACCCCGCCCgGCGa-- -3'
miRNA:   3'- -GAGUGuuguuUGGGGCGGGgCGUagu -5'
5301 5' -55.1 NC_001798.1 + 91508 0.68 0.84028
Target:  5'- uCUUAcCGGCGGACCCgCGCCCgggucccuucugCGCGUCc -3'
miRNA:   3'- -GAGU-GUUGUUUGGG-GCGGG------------GCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 80784 0.68 0.84028
Target:  5'- aCUCGCGccccgGCGGGCCggacgCCGCCCUGCG-CGa -3'
miRNA:   3'- -GAGUGU-----UGUUUGG-----GGCGGGGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 25201 0.68 0.84028
Target:  5'- -cCGCGGCc-GCCgCGCCCCGCggCGc -3'
miRNA:   3'- gaGUGUUGuuUGGgGCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 122862 0.68 0.84028
Target:  5'- uCUCAgCGACGAcauCCCCGC-CCGCuUCGc -3'
miRNA:   3'- -GAGU-GUUGUUu--GGGGCGgGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 131004 0.68 0.831965
Target:  5'- aUCGCcauACGGGCCgCCGCCaggcgacgggCCGCAUCc -3'
miRNA:   3'- gAGUGu--UGUUUGG-GGCGG----------GGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 149798 0.68 0.831965
Target:  5'- -aCGCGACGcuCCCaccaGCCCCGCccgCAg -3'
miRNA:   3'- gaGUGUUGUuuGGGg---CGGGGCGua-GU- -5'
5301 5' -55.1 NC_001798.1 + 82051 0.68 0.831965
Target:  5'- cCUCGcCGACAccCCCCcgggGCCCCGCGg-- -3'
miRNA:   3'- -GAGU-GUUGUuuGGGG----CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 68217 0.68 0.847598
Target:  5'- aUCACGcGCAGgcccgccACCCCGCCgCGCGcCAc -3'
miRNA:   3'- gAGUGU-UGUU-------UGGGGCGGgGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 30246 0.68 0.848402
Target:  5'- gUCA-AGCAGcCCgCCGCCCCGCAc-- -3'
miRNA:   3'- gAGUgUUGUUuGG-GGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 21778 0.68 0.848402
Target:  5'- -gCGCGAgGAACggCCCGCCCCcCGUCc -3'
miRNA:   3'- gaGUGUUgUUUG--GGGCGGGGcGUAGu -5'
5301 5' -55.1 NC_001798.1 + 106093 0.68 0.871544
Target:  5'- gUCGCGGC-GACCCgGCgCCGCGa-- -3'
miRNA:   3'- gAGUGUUGuUUGGGgCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 31933 0.68 0.86404
Target:  5'- cCUCGCcuCuuccuCCgCCGCCCCGCGcUCGc -3'
miRNA:   3'- -GAGUGuuGuuu--GG-GGCGGGGCGU-AGU- -5'
5301 5' -55.1 NC_001798.1 + 5346 0.68 0.86404
Target:  5'- -cCGCAuuauGCGcGGCCCCGCCCCgacgcccgcGCGUCc -3'
miRNA:   3'- gaGUGU----UGU-UUGGGGCGGGG---------CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 107668 0.68 0.86404
Target:  5'- cCUCACcGCcgggauGAUCCCaaCCCGCGUCAc -3'
miRNA:   3'- -GAGUGuUGu-----UUGGGGcgGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 139852 0.68 0.856324
Target:  5'- cCUgGcCAGC-AGCCCCGCCUCGCu--- -3'
miRNA:   3'- -GAgU-GUUGuUUGGGGCGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 129711 0.68 0.856324
Target:  5'- -gCGCAuCGGACCCC-CCaUCGCGUCAc -3'
miRNA:   3'- gaGUGUuGUUUGGGGcGG-GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 94749 0.68 0.856324
Target:  5'- -gCGCAACcagcuCCCCGCCCgGCucuuGUCGc -3'
miRNA:   3'- gaGUGUUGuuu--GGGGCGGGgCG----UAGU- -5'
5301 5' -55.1 NC_001798.1 + 7909 0.68 0.848402
Target:  5'- aUCGCcGC-GGCUgCGCCCUGCGUCc -3'
miRNA:   3'- gAGUGuUGuUUGGgGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 50416 0.68 0.831965
Target:  5'- --gGCGGCGcGCCCCccccccaccaccGCCCCGCcUCAc -3'
miRNA:   3'- gagUGUUGUuUGGGG------------CGGGGCGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.