Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 7909 | 0.68 | 0.848402 |
Target: 5'- aUCGCcGC-GGCUgCGCCCUGCGUCc -3' miRNA: 3'- gAGUGuUGuUUGGgGCGGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 21778 | 0.68 | 0.848402 |
Target: 5'- -gCGCGAgGAACggCCCGCCCCcCGUCc -3' miRNA: 3'- gaGUGUUgUUUG--GGGCGGGGcGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 88792 | 0.69 | 0.796941 |
Target: 5'- --aGCAGCugaucGAACUCCGCCCagcgCGCGUCAc -3' miRNA: 3'- gagUGUUG-----UUUGGGGCGGG----GCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 74792 | 0.69 | 0.796941 |
Target: 5'- -cCACcGCAcgccGCCCCGcCCCCGCAg-- -3' miRNA: 3'- gaGUGuUGUu---UGGGGC-GGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 4029 | 0.69 | 0.787784 |
Target: 5'- gUCGCGGCcGGCCaCCGCCgCGCGg-- -3' miRNA: 3'- gAGUGUUGuUUGG-GGCGGgGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 123177 | 0.69 | 0.787784 |
Target: 5'- cCUCAgccucGCAGACCCCGUCgCGCGUg- -3' miRNA: 3'- -GAGUgu---UGUUUGGGGCGGgGCGUAgu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 81808 | 0.69 | 0.787784 |
Target: 5'- -cCGcCGGCAcuCCCCGCCCCG-GUCGc -3' miRNA: 3'- gaGU-GUUGUuuGGGGCGGGGCgUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 145611 | 0.69 | 0.805945 |
Target: 5'- -cCGCGACcccGACCCCGCCCCa----- -3' miRNA: 3'- gaGUGUUGu--UUGGGGCGGGGcguagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 86107 | 0.69 | 0.81479 |
Target: 5'- -cCGCcGCGGACgCCCGCCgCGCcgCGg -3' miRNA: 3'- gaGUGuUGUUUG-GGGCGGgGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 30562 | 0.69 | 0.823466 |
Target: 5'- -gCACgGACGAgaucGCCCCGCCCCuGCGc-- -3' miRNA: 3'- gaGUG-UUGUU----UGGGGCGGGG-CGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 51401 | 0.69 | 0.823466 |
Target: 5'- --gACGACu-ACCCCGCCgCCGUcgCGc -3' miRNA: 3'- gagUGUUGuuUGGGGCGG-GGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 40017 | 0.69 | 0.823466 |
Target: 5'- gUCGCGGCGGcccuCCUCGUCCCGC-UCc -3' miRNA: 3'- gAGUGUUGUUu---GGGGCGGGGCGuAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 58106 | 0.69 | 0.823466 |
Target: 5'- gUCGCGGCc-GCCCaggGCCCgGCGUCu -3' miRNA: 3'- gAGUGUUGuuUGGGg--CGGGgCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 126475 | 0.69 | 0.823466 |
Target: 5'- --gACGGCcauGACCUCGCCCC-CGUCGc -3' miRNA: 3'- gagUGUUGu--UUGGGGCGGGGcGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 20438 | 0.7 | 0.759498 |
Target: 5'- gUC-CAGgcGGCUCCGCUCCGCAUCu -3' miRNA: 3'- gAGuGUUguUUGGGGCGGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 47954 | 0.7 | 0.769054 |
Target: 5'- --gGCGACcGACCCCGC-CCGCggCAg -3' miRNA: 3'- gagUGUUGuUUGGGGCGgGGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 35014 | 0.7 | 0.759498 |
Target: 5'- cCUCgGCGGcCAAGCCCCGgCCCGCc--- -3' miRNA: 3'- -GAG-UGUU-GUUUGGGGCgGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 75324 | 0.7 | 0.769054 |
Target: 5'- uUCGCAGCucACCaucaaCGCCCUGCgGUCGc -3' miRNA: 3'- gAGUGUUGuuUGGg----GCGGGGCG-UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 82682 | 0.7 | 0.777549 |
Target: 5'- uCUCGCGcuucACGucGACUCCGCgcccccaCCCGCAUCGc -3' miRNA: 3'- -GAGUGU----UGU--UUGGGGCG-------GGGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 76577 | 0.7 | 0.749828 |
Target: 5'- --gGCGACcGGCCCCGCgCCGUacGUCGa -3' miRNA: 3'- gagUGUUGuUUGGGGCGgGGCG--UAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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