Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 124275 | 0.72 | 0.648888 |
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Target: 5'- --uGCGGCAggcGACCcgCCGCCCgCGCAUCAc -3' miRNA: 3'- gagUGUUGU---UUGG--GGCGGG-GCGUAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 25130 | 0.72 | 0.659189 |
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Target: 5'- -gCGCgGACGccCCCCGCCCCGCGg-- -3' miRNA: 3'- gaGUG-UUGUuuGGGGCGGGGCGUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 47824 | 0.72 | 0.669469 |
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Target: 5'- uCUCACGGC---CCCgGCCCCGCGc-- -3' miRNA: 3'- -GAGUGUUGuuuGGGgCGGGGCGUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 43123 | 0.72 | 0.669469 |
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Target: 5'- uUC-CGGCGGGCgCgCGUCCCGCGUCAc -3' miRNA: 3'- gAGuGUUGUUUGgG-GCGGGGCGUAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 117142 | 0.73 | 0.597341 |
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Target: 5'- uUCAaGAUGAGCCCCgugGCCCUGUAUCAc -3' miRNA: 3'- gAGUgUUGUUUGGGG---CGGGGCGUAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 52752 | 0.74 | 0.516544 |
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Target: 5'- -aCACGugGAcCUUCGCCCCGCGUCc -3' miRNA: 3'- gaGUGUugUUuGGGGCGGGGCGUAGu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 105073 | 0.75 | 0.477769 |
|
Target: 5'- aCUCcCGACGAACCCgCgGCCCCGCGg-- -3' miRNA: 3'- -GAGuGUUGUUUGGG-G-CGGGGCGUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 127836 | 0.75 | 0.467357 |
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Target: 5'- uCUgGCGACcgucuuuGGGCCCCGCCCCGCccCAc -3' miRNA: 3'- -GAgUGUUG-------UUUGGGGCGGGGCGuaGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 19349 | 1.09 | 0.003613 |
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Target: 5'- cCUCACAACAAACCCCGCCCCGCAUCAu -3' miRNA: 3'- -GAGUGUUGUUUGGGGCGGGGCGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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