Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 4481 | 0.67 | 0.892725 |
Target: 5'- uCUC-CGguccGCGGACCCagCGgCCCGCGUCGc -3' miRNA: 3'- -GAGuGU----UGUUUGGG--GCgGGGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 125528 | 0.67 | 0.885891 |
Target: 5'- -gCGCAGCGcAUCgCCGCCgaGCGUCAg -3' miRNA: 3'- gaGUGUUGUuUGG-GGCGGggCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 95996 | 0.67 | 0.885891 |
Target: 5'- -aCACAA--GGCCCCGaCUCCGCGaaUCAc -3' miRNA: 3'- gaGUGUUguUUGGGGC-GGGGCGU--AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 27459 | 0.67 | 0.885891 |
Target: 5'- -gCACAGCcugcuaguCCCCGUCCUGCcgCGc -3' miRNA: 3'- gaGUGUUGuuu-----GGGGCGGGGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 92580 | 0.67 | 0.878829 |
Target: 5'- uUCGCGgacuACGcGCCCCgGCCCUGCGa-- -3' miRNA: 3'- gAGUGU----UGUuUGGGG-CGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 124716 | 0.67 | 0.878829 |
Target: 5'- -cCGgGACGAGCCaaaccaGCCCCGCAggCAg -3' miRNA: 3'- gaGUgUUGUUUGGgg----CGGGGCGUa-GU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 75279 | 0.67 | 0.885891 |
Target: 5'- gCUCGCGGCGcgcgaugccGCCCUGgCCCGCGa-- -3' miRNA: 3'- -GAGUGUUGUu--------UGGGGCgGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 145757 | 0.67 | 0.905693 |
Target: 5'- -cCACGGC--ACCCCcCCCCGCcgCc -3' miRNA: 3'- gaGUGUUGuuUGGGGcGGGGCGuaGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 58315 | 0.67 | 0.892725 |
Target: 5'- -aCACAGCuccgucAGgCCCGCCgCCGCGUg- -3' miRNA: 3'- gaGUGUUGu-----UUgGGGCGG-GGCGUAgu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107087 | 0.67 | 0.878829 |
Target: 5'- --gGCccGCAAGCCCCGCCCCcgGCccUCAc -3' miRNA: 3'- gagUGu-UGUUUGGGGCGGGG--CGu-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 35964 | 0.67 | 0.878829 |
Target: 5'- cCUCGCccCGGACCCCucccCCCCGUGUUc -3' miRNA: 3'- -GAGUGuuGUUUGGGGc---GGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 31607 | 0.66 | 0.928753 |
Target: 5'- -gCGCGucCGGAgUCCGCCCCGCGc-- -3' miRNA: 3'- gaGUGUu-GUUUgGGGCGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 18389 | 0.66 | 0.928753 |
Target: 5'- aCUUACGACAGGCCauuugCCGCgUCGCGc-- -3' miRNA: 3'- -GAGUGUUGUUUGG-----GGCGgGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 32035 | 0.66 | 0.928753 |
Target: 5'- -cCGCGgccACGGGCCgCuCGCCCCgGCGUCc -3' miRNA: 3'- gaGUGU---UGUUUGG-G-GCGGGG-CGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 59245 | 0.66 | 0.933911 |
Target: 5'- -cCGCGACAcAUCCCGCaCCCGgGg-- -3' miRNA: 3'- gaGUGUUGUuUGGGGCG-GGGCgUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 25170 | 0.66 | 0.917707 |
Target: 5'- --gGCcGCGccCCCCGCCCCGCc--- -3' miRNA: 3'- gagUGuUGUuuGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 118424 | 0.66 | 0.917707 |
Target: 5'- --uGCuGCuGAGCCCUGCCCCGCc--- -3' miRNA: 3'- gagUGuUG-UUUGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 29793 | 0.66 | 0.917707 |
Target: 5'- gCUCccgGGCGGACCCCgGCCCCGag-CGg -3' miRNA: 3'- -GAGug-UUGUUUGGGG-CGGGGCguaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 47888 | 0.66 | 0.917707 |
Target: 5'- gCUCGCAc---GCCCCuCCCCGCGg-- -3' miRNA: 3'- -GAGUGUuguuUGGGGcGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 78825 | 0.66 | 0.91182 |
Target: 5'- -cCGCGGCGAcgGCCCCGgCCCCuggcGCggCAc -3' miRNA: 3'- gaGUGUUGUU--UGGGGC-GGGG----CGuaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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