Results 121 - 129 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 118424 | 0.66 | 0.917707 |
Target: 5'- --uGCuGCuGAGCCCUGCCCCGCc--- -3' miRNA: 3'- gagUGuUG-UUUGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 123392 | 0.66 | 0.917707 |
Target: 5'- --gGCGACGccaGGCCCCccgggagccgcgGCCCCGCcggGUCAc -3' miRNA: 3'- gagUGUUGU---UUGGGG------------CGGGGCG---UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 25170 | 0.66 | 0.917707 |
Target: 5'- --gGCcGCGccCCCCGCCCCGCc--- -3' miRNA: 3'- gagUGuUGUuuGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107439 | 0.66 | 0.917707 |
Target: 5'- -cCGCGGCGAcCCCgCGCCCCGa---- -3' miRNA: 3'- gaGUGUUGUUuGGG-GCGGGGCguagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 26444 | 0.66 | 0.921683 |
Target: 5'- -gCGCGACGAcgcggacgcgGgCCCGCCCCcgcagauacgcuggGCGUCGg -3' miRNA: 3'- gaGUGUUGUU----------UgGGGCGGGG--------------CGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 51912 | 0.66 | 0.921683 |
Target: 5'- cCUCACGGCGuugcggcccgugggGGCCgCCGCCgugCCGCugcUCAg -3' miRNA: 3'- -GAGUGUUGU--------------UUGG-GGCGG---GGCGu--AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 16272 | 0.66 | 0.923351 |
Target: 5'- -cCACAACAGACCCacgugcagcuCGCCgCCGaguUCGa -3' miRNA: 3'- gaGUGUUGUUUGGG----------GCGG-GGCgu-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 53836 | 0.66 | 0.923351 |
Target: 5'- gUCGCcGCcuGGGCCCCGCCgaucgCCGguUCGu -3' miRNA: 3'- gAGUGuUG--UUUGGGGCGG-----GGCguAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 102236 | 0.66 | 0.91182 |
Target: 5'- gCUCGgGGCGGGCCUCGCCCgGg---- -3' miRNA: 3'- -GAGUgUUGUUUGGGGCGGGgCguagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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