Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 21778 | 0.68 | 0.848402 |
Target: 5'- -gCGCGAgGAACggCCCGCCCCcCGUCc -3' miRNA: 3'- gaGUGUUgUUUG--GGGCGGGGcGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 7909 | 0.68 | 0.848402 |
Target: 5'- aUCGCcGC-GGCUgCGCCCUGCGUCc -3' miRNA: 3'- gAGUGuUGuUUGGgGCGGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 94749 | 0.68 | 0.856324 |
Target: 5'- -gCGCAACcagcuCCCCGCCCgGCucuuGUCGc -3' miRNA: 3'- gaGUGUUGuuu--GGGGCGGGgCG----UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 129711 | 0.68 | 0.856324 |
Target: 5'- -gCGCAuCGGACCCC-CCaUCGCGUCAc -3' miRNA: 3'- gaGUGUuGUUUGGGGcGG-GGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 139852 | 0.68 | 0.856324 |
Target: 5'- cCUgGcCAGC-AGCCCCGCCUCGCu--- -3' miRNA: 3'- -GAgU-GUUGuUUGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 5346 | 0.68 | 0.86404 |
Target: 5'- -cCGCAuuauGCGcGGCCCCGCCCCgacgcccgcGCGUCc -3' miRNA: 3'- gaGUGU----UGU-UUGGGGCGGGG---------CGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 31933 | 0.68 | 0.86404 |
Target: 5'- cCUCGCcuCuuccuCCgCCGCCCCGCGcUCGc -3' miRNA: 3'- -GAGUGuuGuuu--GG-GGCGGGGCGU-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107668 | 0.68 | 0.86404 |
Target: 5'- cCUCACcGCcgggauGAUCCCaaCCCGCGUCAc -3' miRNA: 3'- -GAGUGuUGu-----UUGGGGcgGGGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 106093 | 0.68 | 0.871544 |
Target: 5'- gUCGCGGC-GACCCgGCgCCGCGa-- -3' miRNA: 3'- gAGUGUUGuUUGGGgCGgGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 118877 | 0.68 | 0.871544 |
Target: 5'- cCUCuGCAACGgggaucccgucAGCCUCGUCCCGCccGUCu -3' miRNA: 3'- -GAG-UGUUGU-----------UUGGGGCGGGGCG--UAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 124716 | 0.67 | 0.878829 |
Target: 5'- -cCGgGACGAGCCaaaccaGCCCCGCAggCAg -3' miRNA: 3'- gaGUgUUGUUUGGgg----CGGGGCGUa-GU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107087 | 0.67 | 0.878829 |
Target: 5'- --gGCccGCAAGCCCCGCCCCcgGCccUCAc -3' miRNA: 3'- gagUGu-UGUUUGGGGCGGGG--CGu-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 35964 | 0.67 | 0.878829 |
Target: 5'- cCUCGCccCGGACCCCucccCCCCGUGUUc -3' miRNA: 3'- -GAGUGuuGUUUGGGGc---GGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 92580 | 0.67 | 0.878829 |
Target: 5'- uUCGCGgacuACGcGCCCCgGCCCUGCGa-- -3' miRNA: 3'- gAGUGU----UGUuUGGGG-CGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 27459 | 0.67 | 0.885891 |
Target: 5'- -gCACAGCcugcuaguCCCCGUCCUGCcgCGc -3' miRNA: 3'- gaGUGUUGuuu-----GGGGCGGGGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 95996 | 0.67 | 0.885891 |
Target: 5'- -aCACAA--GGCCCCGaCUCCGCGaaUCAc -3' miRNA: 3'- gaGUGUUguUUGGGGC-GGGGCGU--AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 125528 | 0.67 | 0.885891 |
Target: 5'- -gCGCAGCGcAUCgCCGCCgaGCGUCAg -3' miRNA: 3'- gaGUGUUGUuUGG-GGCGGggCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 7550 | 0.67 | 0.885891 |
Target: 5'- -gCACGuACG--UUCUGCCCCGCGUCGg -3' miRNA: 3'- gaGUGU-UGUuuGGGGCGGGGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 50971 | 0.67 | 0.885891 |
Target: 5'- gUCcCAu---GCCCCGUCCgCGCAUCGc -3' miRNA: 3'- gAGuGUuguuUGGGGCGGG-GCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 127350 | 0.67 | 0.885891 |
Target: 5'- -cCugGGCGu-CCCCGUgaCCCGCGUCc -3' miRNA: 3'- gaGugUUGUuuGGGGCG--GGGCGUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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