Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 75145 | 0.66 | 0.933911 |
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Target: 5'- --gACGACGGGCCCgCGagCCCGuCGUCGc -3' miRNA: 3'- gagUGUUGUUUGGG-GCg-GGGC-GUAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 59245 | 0.66 | 0.933911 |
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Target: 5'- -cCGCGACAcAUCCCGCaCCCGgGg-- -3' miRNA: 3'- gaGUGUUGUuUGGGGCG-GGGCgUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 2884 | 0.66 | 0.933911 |
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Target: 5'- -cCACGcGCAGGuCCCCGCgCaggCGCAUCAg -3' miRNA: 3'- gaGUGU-UGUUU-GGGGCG-Gg--GCGUAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 34800 | 0.66 | 0.933911 |
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Target: 5'- -gCGCGGCccgGGGCCCCGgggcCCCCGCGc-- -3' miRNA: 3'- gaGUGUUG---UUUGGGGC----GGGGCGUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 97862 | 0.66 | 0.938827 |
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Target: 5'- gUCAuCGACAAccGCgCCGCCCCggGCGUg- -3' miRNA: 3'- gAGU-GUUGUU--UGgGGCGGGG--CGUAgu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 29021 | 0.66 | 0.938827 |
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Target: 5'- -gCGCGGgccCGGACUCCGCCCCgGCGa-- -3' miRNA: 3'- gaGUGUU---GUUUGGGGCGGGG-CGUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 48352 | 0.66 | 0.938827 |
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Target: 5'- -aCGCGACcgcGGCCgcccggggCCGCCCCGCGgggCGu -3' miRNA: 3'- gaGUGUUGu--UUGG--------GGCGGGGCGUa--GU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 116625 | 0.66 | 0.938827 |
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Target: 5'- aUCcCGugAccGACCCCGCCCacccgcuGCAUCc -3' miRNA: 3'- gAGuGUugU--UUGGGGCGGGg------CGUAGu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 153844 | 0.66 | 0.938827 |
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Target: 5'- cCUC-CGGCGccuuccCCCCGCCCuCGC-UCGg -3' miRNA: 3'- -GAGuGUUGUuu----GGGGCGGG-GCGuAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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