Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 106093 | 0.68 | 0.871544 |
Target: 5'- gUCGCGGC-GACCCgGCgCCGCGa-- -3' miRNA: 3'- gAGUGUUGuUUGGGgCGgGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107668 | 0.68 | 0.86404 |
Target: 5'- cCUCACcGCcgggauGAUCCCaaCCCGCGUCAc -3' miRNA: 3'- -GAGUGuUGu-----UUGGGGcgGGGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 5346 | 0.68 | 0.86404 |
Target: 5'- -cCGCAuuauGCGcGGCCCCGCCCCgacgcccgcGCGUCc -3' miRNA: 3'- gaGUGU----UGU-UUGGGGCGGGG---------CGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 31933 | 0.68 | 0.86404 |
Target: 5'- cCUCGCcuCuuccuCCgCCGCCCCGCGcUCGc -3' miRNA: 3'- -GAGUGuuGuuu--GG-GGCGGGGCGU-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 139852 | 0.68 | 0.856324 |
Target: 5'- cCUgGcCAGC-AGCCCCGCCUCGCu--- -3' miRNA: 3'- -GAgU-GUUGuUUGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 129711 | 0.68 | 0.856324 |
Target: 5'- -gCGCAuCGGACCCC-CCaUCGCGUCAc -3' miRNA: 3'- gaGUGUuGUUUGGGGcGG-GGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 94749 | 0.68 | 0.856324 |
Target: 5'- -gCGCAACcagcuCCCCGCCCgGCucuuGUCGc -3' miRNA: 3'- gaGUGUUGuuu--GGGGCGGGgCG----UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 30246 | 0.68 | 0.848402 |
Target: 5'- gUCA-AGCAGcCCgCCGCCCCGCAc-- -3' miRNA: 3'- gAGUgUUGUUuGG-GGCGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 21778 | 0.68 | 0.848402 |
Target: 5'- -gCGCGAgGAACggCCCGCCCCcCGUCc -3' miRNA: 3'- gaGUGUUgUUUG--GGGCGGGGcGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 7909 | 0.68 | 0.848402 |
Target: 5'- aUCGCcGC-GGCUgCGCCCUGCGUCc -3' miRNA: 3'- gAGUGuUGuUUGGgGCGGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 68217 | 0.68 | 0.847598 |
Target: 5'- aUCACGcGCAGgcccgccACCCCGCCgCGCGcCAc -3' miRNA: 3'- gAGUGU-UGUU-------UGGGGCGGgGCGUaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 122862 | 0.68 | 0.84028 |
Target: 5'- uCUCAgCGACGAcauCCCCGC-CCGCuUCGc -3' miRNA: 3'- -GAGU-GUUGUUu--GGGGCGgGGCGuAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 25201 | 0.68 | 0.84028 |
Target: 5'- -cCGCGGCc-GCCgCGCCCCGCggCGc -3' miRNA: 3'- gaGUGUUGuuUGGgGCGGGGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 80784 | 0.68 | 0.84028 |
Target: 5'- aCUCGCGccccgGCGGGCCggacgCCGCCCUGCG-CGa -3' miRNA: 3'- -GAGUGU-----UGUUUGG-----GGCGGGGCGUaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 91508 | 0.68 | 0.84028 |
Target: 5'- uCUUAcCGGCGGACCCgCGCCCgggucccuucugCGCGUCc -3' miRNA: 3'- -GAGU-GUUGUUUGGG-GCGGG------------GCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 132327 | 0.68 | 0.84028 |
Target: 5'- aCUCGCuc---ACCCCGCCCgGCGa-- -3' miRNA: 3'- -GAGUGuuguuUGGGGCGGGgCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 14806 | 0.68 | 0.84028 |
Target: 5'- aUCGCcuGC--GCCCCGCCCgGCcgCGc -3' miRNA: 3'- gAGUGu-UGuuUGGGGCGGGgCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 149798 | 0.68 | 0.831965 |
Target: 5'- -aCGCGACGcuCCCaccaGCCCCGCccgCAg -3' miRNA: 3'- gaGUGUUGUuuGGGg---CGGGGCGua-GU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 82051 | 0.68 | 0.831965 |
Target: 5'- cCUCGcCGACAccCCCCcgggGCCCCGCGg-- -3' miRNA: 3'- -GAGU-GUUGUuuGGGG----CGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 50416 | 0.68 | 0.831965 |
Target: 5'- --gGCGGCGcGCCCCccccccaccaccGCCCCGCcUCAc -3' miRNA: 3'- gagUGUUGUuUGGGG------------CGGGGCGuAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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