miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 76577 0.7 0.749828
Target:  5'- --gGCGACcGGCCCCGCgCCGUacGUCGa -3'
miRNA:   3'- gagUGUUGuUUGGGGCGgGGCG--UAGU- -5'
5301 5' -55.1 NC_001798.1 + 25065 0.7 0.749828
Target:  5'- -gCGCAA-GAGCCCCGCCCCGg---- -3'
miRNA:   3'- gaGUGUUgUUUGGGGCGGGGCguagu -5'
5301 5' -55.1 NC_001798.1 + 139298 0.7 0.740052
Target:  5'- -gCAUAGCGccgcguCgCCGCCCCGCGUCc -3'
miRNA:   3'- gaGUGUUGUuu----GgGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 43339 0.7 0.73018
Target:  5'- --gGCGGCAGugCCgCcCCCCGCGUCGu -3'
miRNA:   3'- gagUGUUGUUugGG-GcGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 57894 0.7 0.73018
Target:  5'- -cCACGGCAc-CCCCGCCCC-CAUUu -3'
miRNA:   3'- gaGUGUUGUuuGGGGCGGGGcGUAGu -5'
5301 5' -55.1 NC_001798.1 + 129034 0.7 0.73018
Target:  5'- --gGCGAU--GCUCCGCCCCGgAUCGg -3'
miRNA:   3'- gagUGUUGuuUGGGGCGGGGCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 145707 0.7 0.729188
Target:  5'- aCUCGgcggacCAGCGAGCCCCggccccggcccgcGCCCCGCcgCc -3'
miRNA:   3'- -GAGU------GUUGUUUGGGG-------------CGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 4963 0.71 0.720223
Target:  5'- aUCGCGACcucGGCCCCgcgGCCCugCGCGUCGu -3'
miRNA:   3'- gAGUGUUGu--UUGGGG---CGGG--GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 102832 0.71 0.710188
Target:  5'- -gCGCAgggGCAGACUCCGCCCCcCAUa- -3'
miRNA:   3'- gaGUGU---UGUUUGGGGCGGGGcGUAgu -5'
5301 5' -55.1 NC_001798.1 + 546 0.71 0.710188
Target:  5'- gCUCGCAGC-AGCCCCucccucccgcGCCCCGUg--- -3'
miRNA:   3'- -GAGUGUUGuUUGGGG----------CGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 417 0.71 0.689926
Target:  5'- gCUCGCGGC-AGCCCCucccCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuUUGGGGc---GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 52803 0.71 0.689926
Target:  5'- --gACGGCAGACCCCGCcuuCCUGC-UCGa -3'
miRNA:   3'- gagUGUUGUUUGGGGCG---GGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 154325 0.71 0.689926
Target:  5'- -gCAgGACGggGACuCCCGCCCCGCcUCu -3'
miRNA:   3'- gaGUgUUGU--UUG-GGGCGGGGCGuAGu -5'
5301 5' -55.1 NC_001798.1 + 80174 0.71 0.689926
Target:  5'- gUC-CAGCGccuGACCCCGCaucccgacgCCCGCAUCc -3'
miRNA:   3'- gAGuGUUGU---UUGGGGCG---------GGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 107468 0.71 0.679717
Target:  5'- --gACGGCGcgggguCUCUGCCCCGCAUCGa -3'
miRNA:   3'- gagUGUUGUuu----GGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 43123 0.72 0.669469
Target:  5'- uUC-CGGCGGGCgCgCGUCCCGCGUCAc -3'
miRNA:   3'- gAGuGUUGUUUGgG-GCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 47824 0.72 0.669469
Target:  5'- uCUCACGGC---CCCgGCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuuuGGGgCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 25130 0.72 0.659189
Target:  5'- -gCGCgGACGccCCCCGCCCCGCGg-- -3'
miRNA:   3'- gaGUG-UUGUuuGGGGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 124275 0.72 0.648888
Target:  5'- --uGCGGCAggcGACCcgCCGCCCgCGCAUCAc -3'
miRNA:   3'- gagUGUUGU---UUGG--GGCGGG-GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 121190 0.72 0.648888
Target:  5'- uCUCACccgggacccgAGC-AGCCCCGCCUCGCugauUCAc -3'
miRNA:   3'- -GAGUG----------UUGuUUGGGGCGGGGCGu---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.