Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 74792 | 0.69 | 0.796941 |
Target: 5'- -cCACcGCAcgccGCCCCGcCCCCGCAg-- -3' miRNA: 3'- gaGUGuUGUu---UGGGGC-GGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 75145 | 0.66 | 0.933911 |
Target: 5'- --gACGACGGGCCCgCGagCCCGuCGUCGc -3' miRNA: 3'- gagUGUUGUUUGGG-GCg-GGGC-GUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 75279 | 0.67 | 0.885891 |
Target: 5'- gCUCGCGGCGcgcgaugccGCCCUGgCCCGCGa-- -3' miRNA: 3'- -GAGUGUUGUu--------UGGGGCgGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 75324 | 0.7 | 0.769054 |
Target: 5'- uUCGCAGCucACCaucaaCGCCCUGCgGUCGc -3' miRNA: 3'- gAGUGUUGuuUGGg----GCGGGGCG-UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 76577 | 0.7 | 0.749828 |
Target: 5'- --gGCGACcGGCCCCGCgCCGUacGUCGa -3' miRNA: 3'- gagUGUUGuUUGGGGCGgGGCG--UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 78825 | 0.66 | 0.91182 |
Target: 5'- -cCGCGGCGAcgGCCCCGgCCCCuggcGCggCAc -3' miRNA: 3'- gaGUGUUGUU--UGGGGC-GGGG----CGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 80174 | 0.71 | 0.689926 |
Target: 5'- gUC-CAGCGccuGACCCCGCaucccgacgCCCGCAUCc -3' miRNA: 3'- gAGuGUUGU---UUGGGGCG---------GGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 80784 | 0.68 | 0.84028 |
Target: 5'- aCUCGCGccccgGCGGGCCggacgCCGCCCUGCG-CGa -3' miRNA: 3'- -GAGUGU-----UGUUUGG-----GGCGGGGCGUaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 81102 | 0.72 | 0.638573 |
Target: 5'- uCUCGCGGCGAGCgCCGCCgaCGCGg-- -3' miRNA: 3'- -GAGUGUUGUUUGgGGCGGg-GCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 81808 | 0.69 | 0.787784 |
Target: 5'- -cCGcCGGCAcuCCCCGCCCCG-GUCGc -3' miRNA: 3'- gaGU-GUUGUuuGGGGCGGGGCgUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 82051 | 0.68 | 0.831965 |
Target: 5'- cCUCGcCGACAccCCCCcgggGCCCCGCGg-- -3' miRNA: 3'- -GAGU-GUUGUuuGGGG----CGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 82682 | 0.7 | 0.777549 |
Target: 5'- uCUCGCGcuucACGucGACUCCGCgcccccaCCCGCAUCGc -3' miRNA: 3'- -GAGUGU----UGU--UUGGGGCG-------GGGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 86107 | 0.69 | 0.81479 |
Target: 5'- -cCGCcGCGGACgCCCGCCgCGCcgCGg -3' miRNA: 3'- gaGUGuUGUUUG-GGGCGGgGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 88792 | 0.69 | 0.796941 |
Target: 5'- --aGCAGCugaucGAACUCCGCCCagcgCGCGUCAc -3' miRNA: 3'- gagUGUUG-----UUUGGGGCGGG----GCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 91508 | 0.68 | 0.84028 |
Target: 5'- uCUUAcCGGCGGACCCgCGCCCgggucccuucugCGCGUCc -3' miRNA: 3'- -GAGU-GUUGUUUGGG-GCGGG------------GCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 92580 | 0.67 | 0.878829 |
Target: 5'- uUCGCGgacuACGcGCCCCgGCCCUGCGa-- -3' miRNA: 3'- gAGUGU----UGUuUGGGG-CGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 94749 | 0.68 | 0.856324 |
Target: 5'- -gCGCAACcagcuCCCCGCCCgGCucuuGUCGc -3' miRNA: 3'- gaGUGUUGuuu--GGGGCGGGgCG----UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 95996 | 0.67 | 0.885891 |
Target: 5'- -aCACAA--GGCCCCGaCUCCGCGaaUCAc -3' miRNA: 3'- gaGUGUUguUUGGGGC-GGGGCGU--AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 96071 | 0.66 | 0.923351 |
Target: 5'- gUCA----GGGgCCCGCCgCCGCAUCAg -3' miRNA: 3'- gAGUguugUUUgGGGCGG-GGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 97862 | 0.66 | 0.938827 |
Target: 5'- gUCAuCGACAAccGCgCCGCCCCggGCGUg- -3' miRNA: 3'- gAGU-GUUGUU--UGgGGCGGGG--CGUAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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