miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 102236 0.66 0.91182
Target:  5'- gCUCGgGGCGGGCCUCGCCCgGg---- -3'
miRNA:   3'- -GAGUgUUGUUUGGGGCGGGgCguagu -5'
5301 5' -55.1 NC_001798.1 + 102832 0.71 0.710188
Target:  5'- -gCGCAgggGCAGACUCCGCCCCcCAUa- -3'
miRNA:   3'- gaGUGU---UGUUUGGGGCGGGGcGUAgu -5'
5301 5' -55.1 NC_001798.1 + 105073 0.75 0.477769
Target:  5'- aCUCcCGACGAACCCgCgGCCCCGCGg-- -3'
miRNA:   3'- -GAGuGUUGUUUGGG-G-CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 106093 0.68 0.871544
Target:  5'- gUCGCGGC-GACCCgGCgCCGCGa-- -3'
miRNA:   3'- gAGUGUUGuUUGGGgCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 106526 0.67 0.905067
Target:  5'- cCUCgaACAGCGAGCgacccugcagcgaCCCGCUCaucaGCGUCAg -3'
miRNA:   3'- -GAG--UGUUGUUUG-------------GGGCGGGg---CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 107087 0.67 0.878829
Target:  5'- --gGCccGCAAGCCCCGCCCCcgGCccUCAc -3'
miRNA:   3'- gagUGu-UGUUUGGGGCGGGG--CGu-AGU- -5'
5301 5' -55.1 NC_001798.1 + 107439 0.66 0.917707
Target:  5'- -cCGCGGCGAcCCCgCGCCCCGa---- -3'
miRNA:   3'- gaGUGUUGUUuGGG-GCGGGGCguagu -5'
5301 5' -55.1 NC_001798.1 + 107468 0.71 0.679717
Target:  5'- --gACGGCGcgggguCUCUGCCCCGCAUCGa -3'
miRNA:   3'- gagUGUUGUuu----GGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 107668 0.68 0.86404
Target:  5'- cCUCACcGCcgggauGAUCCCaaCCCGCGUCAc -3'
miRNA:   3'- -GAGUGuUGu-----UUGGGGcgGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 110127 0.66 0.923351
Target:  5'- gUCACc-CAcACCCCcuuGCCCCGCGggaUCGg -3'
miRNA:   3'- gAGUGuuGUuUGGGG---CGGGGCGU---AGU- -5'
5301 5' -55.1 NC_001798.1 + 111082 0.66 0.91182
Target:  5'- gCUCGggcgaGACGGACCCC-CCCgGgGUCAg -3'
miRNA:   3'- -GAGUg----UUGUUUGGGGcGGGgCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 116625 0.66 0.938827
Target:  5'- aUCcCGugAccGACCCCGCCCacccgcuGCAUCc -3'
miRNA:   3'- gAGuGUugU--UUGGGGCGGGg------CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 117142 0.73 0.597341
Target:  5'- uUCAaGAUGAGCCCCgugGCCCUGUAUCAc -3'
miRNA:   3'- gAGUgUUGUUUGGGG---CGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 118056 0.72 0.638573
Target:  5'- aUCACcuGCGccagcGACCCCGCCCUGCuacgCAg -3'
miRNA:   3'- gAGUGu-UGU-----UUGGGGCGGGGCGua--GU- -5'
5301 5' -55.1 NC_001798.1 + 118424 0.66 0.917707
Target:  5'- --uGCuGCuGAGCCCUGCCCCGCc--- -3'
miRNA:   3'- gagUGuUG-UUUGGGGCGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 118877 0.68 0.871544
Target:  5'- cCUCuGCAACGgggaucccgucAGCCUCGUCCCGCccGUCu -3'
miRNA:   3'- -GAG-UGUUGU-----------UUGGGGCGGGGCG--UAGu -5'
5301 5' -55.1 NC_001798.1 + 121190 0.72 0.648888
Target:  5'- uCUCACccgggacccgAGC-AGCCCCGCCUCGCugauUCAc -3'
miRNA:   3'- -GAGUG----------UUGuUUGGGGCGGGGCGu---AGU- -5'
5301 5' -55.1 NC_001798.1 + 122862 0.68 0.84028
Target:  5'- uCUCAgCGACGAcauCCCCGC-CCGCuUCGc -3'
miRNA:   3'- -GAGU-GUUGUUu--GGGGCGgGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 123177 0.69 0.787784
Target:  5'- cCUCAgccucGCAGACCCCGUCgCGCGUg- -3'
miRNA:   3'- -GAGUgu---UGUUUGGGGCGGgGCGUAgu -5'
5301 5' -55.1 NC_001798.1 + 123392 0.66 0.917707
Target:  5'- --gGCGACGccaGGCCCCccgggagccgcgGCCCCGCcggGUCAc -3'
miRNA:   3'- gagUGUUGU---UUGGGG------------CGGGGCG---UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.