Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 145707 | 0.7 | 0.729188 |
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Target: 5'- aCUCGgcggacCAGCGAGCCCCggccccggcccgcGCCCCGCcgCc -3' miRNA: 3'- -GAGU------GUUGUUUGGGG-------------CGGGGCGuaGu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 145757 | 0.67 | 0.905693 |
|
Target: 5'- -cCACGGC--ACCCCcCCCCGCcgCc -3' miRNA: 3'- gaGUGUUGuuUGGGGcGGGGCGuaGu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 145963 | 0.66 | 0.91182 |
|
Target: 5'- -cCACccACcuACCCCGCgCCCGCAg-- -3' miRNA: 3'- gaGUGu-UGuuUGGGGCG-GGGCGUagu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 146599 | 0.66 | 0.923351 |
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Target: 5'- -cCGCGGCGccagcGGCCCaCGCCucccgCCGCAUUAg -3' miRNA: 3'- gaGUGUUGU-----UUGGG-GCGG-----GGCGUAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 146764 | 0.67 | 0.899327 |
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Target: 5'- --aGCc-CGAGCCCCGCCCgCGUGUUg -3' miRNA: 3'- gagUGuuGUUUGGGGCGGG-GCGUAGu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 148226 | 0.66 | 0.928753 |
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Target: 5'- -aCGC-GCGAGCCCCcucGCCCCGaugggaGUCu -3' miRNA: 3'- gaGUGuUGUUUGGGG---CGGGGCg-----UAGu -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 149798 | 0.68 | 0.831965 |
|
Target: 5'- -aCGCGACGcuCCCaccaGCCCCGCccgCAg -3' miRNA: 3'- gaGUGUUGUuuGGGg---CGGGGCGua-GU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 153844 | 0.66 | 0.938827 |
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Target: 5'- cCUC-CGGCGccuuccCCCCGCCCuCGC-UCGg -3' miRNA: 3'- -GAGuGUUGUuu----GGGGCGGG-GCGuAGU- -5' |
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| 5301 | 5' | -55.1 | NC_001798.1 | + | 154325 | 0.71 | 0.689926 |
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Target: 5'- -gCAgGACGggGACuCCCGCCCCGCcUCu -3' miRNA: 3'- gaGUgUUGU--UUG-GGGCGGGGCGuAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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