miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 107668 0.68 0.86404
Target:  5'- cCUCACcGCcgggauGAUCCCaaCCCGCGUCAc -3'
miRNA:   3'- -GAGUGuUGu-----UUGGGGcgGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 107468 0.71 0.679717
Target:  5'- --gACGGCGcgggguCUCUGCCCCGCAUCGa -3'
miRNA:   3'- gagUGUUGUuu----GGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 107439 0.66 0.917707
Target:  5'- -cCGCGGCGAcCCCgCGCCCCGa---- -3'
miRNA:   3'- gaGUGUUGUUuGGG-GCGGGGCguagu -5'
5301 5' -55.1 NC_001798.1 + 107087 0.67 0.878829
Target:  5'- --gGCccGCAAGCCCCGCCCCcgGCccUCAc -3'
miRNA:   3'- gagUGu-UGUUUGGGGCGGGG--CGu-AGU- -5'
5301 5' -55.1 NC_001798.1 + 106526 0.67 0.905067
Target:  5'- cCUCgaACAGCGAGCgacccugcagcgaCCCGCUCaucaGCGUCAg -3'
miRNA:   3'- -GAG--UGUUGUUUG-------------GGGCGGGg---CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 106093 0.68 0.871544
Target:  5'- gUCGCGGC-GACCCgGCgCCGCGa-- -3'
miRNA:   3'- gAGUGUUGuUUGGGgCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 105073 0.75 0.477769
Target:  5'- aCUCcCGACGAACCCgCgGCCCCGCGg-- -3'
miRNA:   3'- -GAGuGUUGUUUGGG-G-CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 102832 0.71 0.710188
Target:  5'- -gCGCAgggGCAGACUCCGCCCCcCAUa- -3'
miRNA:   3'- gaGUGU---UGUUUGGGGCGGGGcGUAgu -5'
5301 5' -55.1 NC_001798.1 + 102236 0.66 0.91182
Target:  5'- gCUCGgGGCGGGCCUCGCCCgGg---- -3'
miRNA:   3'- -GAGUgUUGUUUGGGGCGGGgCguagu -5'
5301 5' -55.1 NC_001798.1 + 97862 0.66 0.938827
Target:  5'- gUCAuCGACAAccGCgCCGCCCCggGCGUg- -3'
miRNA:   3'- gAGU-GUUGUU--UGgGGCGGGG--CGUAgu -5'
5301 5' -55.1 NC_001798.1 + 96071 0.66 0.923351
Target:  5'- gUCA----GGGgCCCGCCgCCGCAUCAg -3'
miRNA:   3'- gAGUguugUUUgGGGCGG-GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 95996 0.67 0.885891
Target:  5'- -aCACAA--GGCCCCGaCUCCGCGaaUCAc -3'
miRNA:   3'- gaGUGUUguUUGGGGC-GGGGCGU--AGU- -5'
5301 5' -55.1 NC_001798.1 + 94749 0.68 0.856324
Target:  5'- -gCGCAACcagcuCCCCGCCCgGCucuuGUCGc -3'
miRNA:   3'- gaGUGUUGuuu--GGGGCGGGgCG----UAGU- -5'
5301 5' -55.1 NC_001798.1 + 92580 0.67 0.878829
Target:  5'- uUCGCGgacuACGcGCCCCgGCCCUGCGa-- -3'
miRNA:   3'- gAGUGU----UGUuUGGGG-CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 91508 0.68 0.84028
Target:  5'- uCUUAcCGGCGGACCCgCGCCCgggucccuucugCGCGUCc -3'
miRNA:   3'- -GAGU-GUUGUUUGGG-GCGGG------------GCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 88792 0.69 0.796941
Target:  5'- --aGCAGCugaucGAACUCCGCCCagcgCGCGUCAc -3'
miRNA:   3'- gagUGUUG-----UUUGGGGCGGG----GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 86107 0.69 0.81479
Target:  5'- -cCGCcGCGGACgCCCGCCgCGCcgCGg -3'
miRNA:   3'- gaGUGuUGUUUG-GGGCGGgGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 82682 0.7 0.777549
Target:  5'- uCUCGCGcuucACGucGACUCCGCgcccccaCCCGCAUCGc -3'
miRNA:   3'- -GAGUGU----UGU--UUGGGGCG-------GGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 82051 0.68 0.831965
Target:  5'- cCUCGcCGACAccCCCCcgggGCCCCGCGg-- -3'
miRNA:   3'- -GAGU-GUUGUuuGGGG----CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 81808 0.69 0.787784
Target:  5'- -cCGcCGGCAcuCCCCGCCCCG-GUCGc -3'
miRNA:   3'- gaGU-GUUGUuuGGGGCGGGGCgUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.