miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 81102 0.72 0.638573
Target:  5'- uCUCGCGGCGAGCgCCGCCgaCGCGg-- -3'
miRNA:   3'- -GAGUGUUGUUUGgGGCGGg-GCGUagu -5'
5301 5' -55.1 NC_001798.1 + 80784 0.68 0.84028
Target:  5'- aCUCGCGccccgGCGGGCCggacgCCGCCCUGCG-CGa -3'
miRNA:   3'- -GAGUGU-----UGUUUGG-----GGCGGGGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 80174 0.71 0.689926
Target:  5'- gUC-CAGCGccuGACCCCGCaucccgacgCCCGCAUCc -3'
miRNA:   3'- gAGuGUUGU---UUGGGGCG---------GGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 78825 0.66 0.91182
Target:  5'- -cCGCGGCGAcgGCCCCGgCCCCuggcGCggCAc -3'
miRNA:   3'- gaGUGUUGUU--UGGGGC-GGGG----CGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 76577 0.7 0.749828
Target:  5'- --gGCGACcGGCCCCGCgCCGUacGUCGa -3'
miRNA:   3'- gagUGUUGuUUGGGGCGgGGCG--UAGU- -5'
5301 5' -55.1 NC_001798.1 + 75324 0.7 0.769054
Target:  5'- uUCGCAGCucACCaucaaCGCCCUGCgGUCGc -3'
miRNA:   3'- gAGUGUUGuuUGGg----GCGGGGCG-UAGU- -5'
5301 5' -55.1 NC_001798.1 + 75279 0.67 0.885891
Target:  5'- gCUCGCGGCGcgcgaugccGCCCUGgCCCGCGa-- -3'
miRNA:   3'- -GAGUGUUGUu--------UGGGGCgGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 75145 0.66 0.933911
Target:  5'- --gACGACGGGCCCgCGagCCCGuCGUCGc -3'
miRNA:   3'- gagUGUUGUUUGGG-GCg-GGGC-GUAGU- -5'
5301 5' -55.1 NC_001798.1 + 74792 0.69 0.796941
Target:  5'- -cCACcGCAcgccGCCCCGcCCCCGCAg-- -3'
miRNA:   3'- gaGUGuUGUu---UGGGGC-GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 68943 0.72 0.617935
Target:  5'- gUC-CAGCcgcGCCCCGgCCCGCGUCc -3'
miRNA:   3'- gAGuGUUGuu-UGGGGCgGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 68217 0.68 0.847598
Target:  5'- aUCACGcGCAGgcccgccACCCCGCCgCGCGcCAc -3'
miRNA:   3'- gAGUGU-UGUU-------UGGGGCGGgGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 59245 0.66 0.933911
Target:  5'- -cCGCGACAcAUCCCGCaCCCGgGg-- -3'
miRNA:   3'- gaGUGUUGUuUGGGGCG-GGGCgUagu -5'
5301 5' -55.1 NC_001798.1 + 59085 0.67 0.899327
Target:  5'- --aACGACAGACCCCacgaaGCCCaGCGUg- -3'
miRNA:   3'- gagUGUUGUUUGGGG-----CGGGgCGUAgu -5'
5301 5' -55.1 NC_001798.1 + 58315 0.67 0.892725
Target:  5'- -aCACAGCuccgucAGgCCCGCCgCCGCGUg- -3'
miRNA:   3'- gaGUGUUGu-----UUgGGGCGG-GGCGUAgu -5'
5301 5' -55.1 NC_001798.1 + 58106 0.69 0.823466
Target:  5'- gUCGCGGCc-GCCCaggGCCCgGCGUCu -3'
miRNA:   3'- gAGUGUUGuuUGGGg--CGGGgCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 57894 0.7 0.73018
Target:  5'- -cCACGGCAc-CCCCGCCCC-CAUUu -3'
miRNA:   3'- gaGUGUUGUuuGGGGCGGGGcGUAGu -5'
5301 5' -55.1 NC_001798.1 + 54425 0.66 0.933406
Target:  5'- -aUACAACGGACCCgGCgcgacaacgcaccCCCGCcgCu -3'
miRNA:   3'- gaGUGUUGUUUGGGgCG-------------GGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 53836 0.66 0.923351
Target:  5'- gUCGCcGCcuGGGCCCCGCCgaucgCCGguUCGu -3'
miRNA:   3'- gAGUGuUG--UUUGGGGCGG-----GGCguAGU- -5'
5301 5' -55.1 NC_001798.1 + 52803 0.71 0.689926
Target:  5'- --gACGGCAGACCCCGCcuuCCUGC-UCGa -3'
miRNA:   3'- gagUGUUGUUUGGGGCG---GGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 52752 0.74 0.516544
Target:  5'- -aCACGugGAcCUUCGCCCCGCGUCc -3'
miRNA:   3'- gaGUGUugUUuGGGGCGGGGCGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.