miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 51912 0.66 0.921683
Target:  5'- cCUCACGGCGuugcggcccgugggGGCCgCCGCCgugCCGCugcUCAg -3'
miRNA:   3'- -GAGUGUUGU--------------UUGG-GGCGG---GGCGu--AGU- -5'
5301 5' -55.1 NC_001798.1 + 51401 0.69 0.823466
Target:  5'- --gACGACu-ACCCCGCCgCCGUcgCGc -3'
miRNA:   3'- gagUGUUGuuUGGGGCGG-GGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 50971 0.67 0.885891
Target:  5'- gUCcCAu---GCCCCGUCCgCGCAUCGc -3'
miRNA:   3'- gAGuGUuguuUGGGGCGGG-GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 50416 0.68 0.831965
Target:  5'- --gGCGGCGcGCCCCccccccaccaccGCCCCGCcUCAc -3'
miRNA:   3'- gagUGUUGUuUGGGG------------CGGGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 48352 0.66 0.938827
Target:  5'- -aCGCGACcgcGGCCgcccggggCCGCCCCGCGgggCGu -3'
miRNA:   3'- gaGUGUUGu--UUGG--------GGCGGGGCGUa--GU- -5'
5301 5' -55.1 NC_001798.1 + 47954 0.7 0.769054
Target:  5'- --gGCGACcGACCCCGC-CCGCggCAg -3'
miRNA:   3'- gagUGUUGuUUGGGGCGgGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 47888 0.66 0.917707
Target:  5'- gCUCGCAc---GCCCCuCCCCGCGg-- -3'
miRNA:   3'- -GAGUGUuguuUGGGGcGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 47824 0.72 0.669469
Target:  5'- uCUCACGGC---CCCgGCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuuuGGGgCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 43339 0.7 0.73018
Target:  5'- --gGCGGCAGugCCgCcCCCCGCGUCGu -3'
miRNA:   3'- gagUGUUGUUugGG-GcGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 43123 0.72 0.669469
Target:  5'- uUC-CGGCGGGCgCgCGUCCCGCGUCAc -3'
miRNA:   3'- gAGuGUUGUUUGgG-GCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 40017 0.69 0.823466
Target:  5'- gUCGCGGCGGcccuCCUCGUCCCGC-UCc -3'
miRNA:   3'- gAGUGUUGUUu---GGGGCGGGGCGuAGu -5'
5301 5' -55.1 NC_001798.1 + 35964 0.67 0.878829
Target:  5'- cCUCGCccCGGACCCCucccCCCCGUGUUc -3'
miRNA:   3'- -GAGUGuuGUUUGGGGc---GGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 35014 0.7 0.759498
Target:  5'- cCUCgGCGGcCAAGCCCCGgCCCGCc--- -3'
miRNA:   3'- -GAG-UGUU-GUUUGGGGCgGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 34800 0.66 0.933911
Target:  5'- -gCGCGGCccgGGGCCCCGgggcCCCCGCGc-- -3'
miRNA:   3'- gaGUGUUG---UUUGGGGC----GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 32630 0.66 0.933406
Target:  5'- --uGCGugAGGCCCCccgacuacccgacGCCCCccGCGUCGg -3'
miRNA:   3'- gagUGUugUUUGGGG-------------CGGGG--CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 32035 0.66 0.928753
Target:  5'- -cCGCGgccACGGGCCgCuCGCCCCgGCGUCc -3'
miRNA:   3'- gaGUGU---UGUUUGG-G-GCGGGG-CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 31933 0.68 0.86404
Target:  5'- cCUCGCcuCuuccuCCgCCGCCCCGCGcUCGc -3'
miRNA:   3'- -GAGUGuuGuuu--GG-GGCGGGGCGU-AGU- -5'
5301 5' -55.1 NC_001798.1 + 31607 0.66 0.928753
Target:  5'- -gCGCGucCGGAgUCCGCCCCGCGc-- -3'
miRNA:   3'- gaGUGUu-GUUUgGGGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 30562 0.69 0.823466
Target:  5'- -gCACgGACGAgaucGCCCCGCCCCuGCGc-- -3'
miRNA:   3'- gaGUG-UUGUU----UGGGGCGGGG-CGUagu -5'
5301 5' -55.1 NC_001798.1 + 30246 0.68 0.848402
Target:  5'- gUCA-AGCAGcCCgCCGCCCCGCAc-- -3'
miRNA:   3'- gAGUgUUGUUuGG-GGCGGGGCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.