Results 121 - 129 of 129 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 5889 | 0.68 | 0.831965 |
|
Target: 5'- gUCAUcccGCGGGCUCCGCCCCGaggCGg -3' miRNA: 3'- gAGUGu--UGUUUGGGGCGGGGCguaGU- -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 5346 | 0.68 | 0.86404 |
|
Target: 5'- -cCGCAuuauGCGcGGCCCCGCCCCgacgcccgcGCGUCc -3' miRNA: 3'- gaGUGU----UGU-UUGGGGCGGGG---------CGUAGu -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 4963 | 0.71 | 0.720223 |
|
Target: 5'- aUCGCGACcucGGCCCCgcgGCCCugCGCGUCGu -3' miRNA: 3'- gAGUGUUGu--UUGGGG---CGGG--GCGUAGU- -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 4481 | 0.67 | 0.892725 |
|
Target: 5'- uCUC-CGguccGCGGACCCagCGgCCCGCGUCGc -3' miRNA: 3'- -GAGuGU----UGUUUGGG--GCgGGGCGUAGU- -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 4152 | 0.67 | 0.905693 |
|
Target: 5'- cCUCGCgGGCAc-CCCCGCCuCCuCGUCGu -3' miRNA: 3'- -GAGUG-UUGUuuGGGGCGG-GGcGUAGU- -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 4029 | 0.69 | 0.787784 |
|
Target: 5'- gUCGCGGCcGGCCaCCGCCgCGCGg-- -3' miRNA: 3'- gAGUGUUGuUUGG-GGCGGgGCGUagu -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 2884 | 0.66 | 0.933911 |
|
Target: 5'- -cCACGcGCAGGuCCCCGCgCaggCGCAUCAg -3' miRNA: 3'- gaGUGU-UGUUU-GGGGCG-Gg--GCGUAGU- -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 546 | 0.71 | 0.710188 |
|
Target: 5'- gCUCGCAGC-AGCCCCucccucccgcGCCCCGUg--- -3' miRNA: 3'- -GAGUGUUGuUUGGGG----------CGGGGCGuagu -5' |
|||||||
| 5301 | 5' | -55.1 | NC_001798.1 | + | 417 | 0.71 | 0.689926 |
|
Target: 5'- gCUCGCGGC-AGCCCCucccCCCCGCGc-- -3' miRNA: 3'- -GAGUGUUGuUUGGGGc---GGGGCGUagu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home