Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 75145 | 0.66 | 0.933911 |
Target: 5'- --gACGACGGGCCCgCGagCCCGuCGUCGc -3' miRNA: 3'- gagUGUUGUUUGGG-GCg-GGGC-GUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 29021 | 0.66 | 0.938827 |
Target: 5'- -gCGCGGgccCGGACUCCGCCCCgGCGa-- -3' miRNA: 3'- gaGUGUU---GUUUGGGGCGGGG-CGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 48352 | 0.66 | 0.938827 |
Target: 5'- -aCGCGACcgcGGCCgcccggggCCGCCCCGCGgggCGu -3' miRNA: 3'- gaGUGUUGu--UUGG--------GGCGGGGCGUa--GU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 116625 | 0.66 | 0.938827 |
Target: 5'- aUCcCGugAccGACCCCGCCCacccgcuGCAUCc -3' miRNA: 3'- gAGuGUugU--UUGGGGCGGGg------CGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 153844 | 0.66 | 0.938827 |
Target: 5'- cCUC-CGGCGccuuccCCCCGCCCuCGC-UCGg -3' miRNA: 3'- -GAGuGUUGUuu----GGGGCGGG-GCGuAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 18389 | 0.66 | 0.928753 |
Target: 5'- aCUUACGACAGGCCauuugCCGCgUCGCGc-- -3' miRNA: 3'- -GAGUGUUGUUUGG-----GGCGgGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 28950 | 0.66 | 0.923351 |
Target: 5'- -cCGCGAgGgcccGGCgCCGCCCCGCcgCu -3' miRNA: 3'- gaGUGUUgU----UUGgGGCGGGGCGuaGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 29793 | 0.66 | 0.917707 |
Target: 5'- gCUCccgGGCGGACCCCgGCCCCGag-CGg -3' miRNA: 3'- -GAGug-UUGUUUGGGG-CGGGGCguaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 118424 | 0.66 | 0.917707 |
Target: 5'- --uGCuGCuGAGCCCUGCCCCGCc--- -3' miRNA: 3'- gagUGuUG-UUUGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 123392 | 0.66 | 0.917707 |
Target: 5'- --gGCGACGccaGGCCCCccgggagccgcgGCCCCGCcggGUCAc -3' miRNA: 3'- gagUGUUGU---UUGGGG------------CGGGGCG---UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 25170 | 0.66 | 0.917707 |
Target: 5'- --gGCcGCGccCCCCGCCCCGCc--- -3' miRNA: 3'- gagUGuUGUuuGGGGCGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107439 | 0.66 | 0.917707 |
Target: 5'- -cCGCGGCGAcCCCgCGCCCCGa---- -3' miRNA: 3'- gaGUGUUGUUuGGG-GCGGGGCguagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 26444 | 0.66 | 0.921683 |
Target: 5'- -gCGCGACGAcgcggacgcgGgCCCGCCCCcgcagauacgcuggGCGUCGg -3' miRNA: 3'- gaGUGUUGUU----------UgGGGCGGGG--------------CGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 51912 | 0.66 | 0.921683 |
Target: 5'- cCUCACGGCGuugcggcccgugggGGCCgCCGCCgugCCGCugcUCAg -3' miRNA: 3'- -GAGUGUUGU--------------UUGG-GGCGG---GGCGu--AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 16272 | 0.66 | 0.923351 |
Target: 5'- -cCACAACAGACCCacgugcagcuCGCCgCCGaguUCGa -3' miRNA: 3'- gaGUGUUGUUUGGG----------GCGG-GGCgu-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 53836 | 0.66 | 0.923351 |
Target: 5'- gUCGCcGCcuGGGCCCCGCCgaucgCCGguUCGu -3' miRNA: 3'- gAGUGuUG--UUUGGGGCGG-----GGCguAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 110127 | 0.66 | 0.923351 |
Target: 5'- gUCACc-CAcACCCCcuuGCCCCGCGggaUCGg -3' miRNA: 3'- gAGUGuuGUuUGGGG---CGGGGCGU---AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 142538 | 0.66 | 0.923351 |
Target: 5'- --gACcACAccCCCCGcCCCCGUAUCc -3' miRNA: 3'- gagUGuUGUuuGGGGC-GGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 96071 | 0.66 | 0.923351 |
Target: 5'- gUCA----GGGgCCCGCCgCCGCAUCAg -3' miRNA: 3'- gAGUguugUUUgGGGCGG-GGCGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 146599 | 0.66 | 0.923351 |
Target: 5'- -cCGCGGCGccagcGGCCCaCGCCucccgCCGCAUUAg -3' miRNA: 3'- gaGUGUUGU-----UUGGG-GCGG-----GGCGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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