miRNA display CGI


Results 101 - 120 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 27459 0.67 0.885891
Target:  5'- -gCACAGCcugcuaguCCCCGUCCUGCcgCGc -3'
miRNA:   3'- gaGUGUUGuuu-----GGGGCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 92580 0.67 0.878829
Target:  5'- uUCGCGgacuACGcGCCCCgGCCCUGCGa-- -3'
miRNA:   3'- gAGUGU----UGUuUGGGG-CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 124716 0.67 0.878829
Target:  5'- -cCGgGACGAGCCaaaccaGCCCCGCAggCAg -3'
miRNA:   3'- gaGUgUUGUUUGGgg----CGGGGCGUa-GU- -5'
5301 5' -55.1 NC_001798.1 + 35964 0.67 0.878829
Target:  5'- cCUCGCccCGGACCCCucccCCCCGUGUUc -3'
miRNA:   3'- -GAGUGuuGUUUGGGGc---GGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 107087 0.67 0.878829
Target:  5'- --gGCccGCAAGCCCCGCCCCcgGCccUCAc -3'
miRNA:   3'- gagUGu-UGUUUGGGGCGGGG--CGu-AGU- -5'
5301 5' -55.1 NC_001798.1 + 124415 0.67 0.892725
Target:  5'- uUUGCAACGAGCU--GCCCCGCgGUCGc -3'
miRNA:   3'- gAGUGUUGUUUGGggCGGGGCG-UAGU- -5'
5301 5' -55.1 NC_001798.1 + 134501 0.67 0.897371
Target:  5'- uUCGCGACAGcCCCCagugcgcguccuccGCCUCGC-UCGc -3'
miRNA:   3'- gAGUGUUGUUuGGGG--------------CGGGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 23291 0.66 0.91182
Target:  5'- gUCGCcGCGAcCCCCggcGCCCCGCc--- -3'
miRNA:   3'- gAGUGuUGUUuGGGG---CGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 111082 0.66 0.91182
Target:  5'- gCUCGggcgaGACGGACCCC-CCCgGgGUCAg -3'
miRNA:   3'- -GAGUg----UUGUUUGGGGcGGGgCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 145963 0.66 0.91182
Target:  5'- -cCACccACcuACCCCGCgCCCGCAg-- -3'
miRNA:   3'- gaGUGu-UGuuUGGGGCG-GGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 128821 0.66 0.91182
Target:  5'- -aCGCGuucgaccccGCGGACCCCGgcgcCCCCGCGg-- -3'
miRNA:   3'- gaGUGU---------UGUUUGGGGC----GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 127770 0.66 0.91182
Target:  5'- -gCGCcccGCGGACCCCGC-CCGCGa-- -3'
miRNA:   3'- gaGUGu--UGUUUGGGGCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 126302 0.66 0.91182
Target:  5'- --gACGGCGccgucuccgGAgCCCGCCCCGgGUCc -3'
miRNA:   3'- gagUGUUGU---------UUgGGGCGGGGCgUAGu -5'
5301 5' -55.1 NC_001798.1 + 102236 0.66 0.91182
Target:  5'- gCUCGgGGCGGGCCUCGCCCgGg---- -3'
miRNA:   3'- -GAGUgUUGUUUGGGGCGGGgCguagu -5'
5301 5' -55.1 NC_001798.1 + 145757 0.67 0.905693
Target:  5'- -cCACGGC--ACCCCcCCCCGCcgCc -3'
miRNA:   3'- gaGUGUUGuuUGGGGcGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 4152 0.67 0.905693
Target:  5'- cCUCGCgGGCAc-CCCCGCCuCCuCGUCGu -3'
miRNA:   3'- -GAGUG-UUGUuuGGGGCGG-GGcGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 106526 0.67 0.905067
Target:  5'- cCUCgaACAGCGAGCgacccugcagcgaCCCGCUCaucaGCGUCAg -3'
miRNA:   3'- -GAG--UGUUGUUUG-------------GGGCGGGg---CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 22850 0.67 0.905067
Target:  5'- -cCACccCGAACCCggaccguCGCCCCGCcgCGc -3'
miRNA:   3'- gaGUGuuGUUUGGG-------GCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 146764 0.67 0.899327
Target:  5'- --aGCc-CGAGCCCCGCCCgCGUGUUg -3'
miRNA:   3'- gagUGuuGUUUGGGGCGGG-GCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 59085 0.67 0.899327
Target:  5'- --aACGACAGACCCCacgaaGCCCaGCGUg- -3'
miRNA:   3'- gagUGUUGUUUGGGG-----CGGGgCGUAgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.