Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5301 | 5' | -55.1 | NC_001798.1 | + | 27459 | 0.67 | 0.885891 |
Target: 5'- -gCACAGCcugcuaguCCCCGUCCUGCcgCGc -3' miRNA: 3'- gaGUGUUGuuu-----GGGGCGGGGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 92580 | 0.67 | 0.878829 |
Target: 5'- uUCGCGgacuACGcGCCCCgGCCCUGCGa-- -3' miRNA: 3'- gAGUGU----UGUuUGGGG-CGGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 124716 | 0.67 | 0.878829 |
Target: 5'- -cCGgGACGAGCCaaaccaGCCCCGCAggCAg -3' miRNA: 3'- gaGUgUUGUUUGGgg----CGGGGCGUa-GU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 35964 | 0.67 | 0.878829 |
Target: 5'- cCUCGCccCGGACCCCucccCCCCGUGUUc -3' miRNA: 3'- -GAGUGuuGUUUGGGGc---GGGGCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 107087 | 0.67 | 0.878829 |
Target: 5'- --gGCccGCAAGCCCCGCCCCcgGCccUCAc -3' miRNA: 3'- gagUGu-UGUUUGGGGCGGGG--CGu-AGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 124415 | 0.67 | 0.892725 |
Target: 5'- uUUGCAACGAGCU--GCCCCGCgGUCGc -3' miRNA: 3'- gAGUGUUGUUUGGggCGGGGCG-UAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 134501 | 0.67 | 0.897371 |
Target: 5'- uUCGCGACAGcCCCCagugcgcguccuccGCCUCGC-UCGc -3' miRNA: 3'- gAGUGUUGUUuGGGG--------------CGGGGCGuAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 23291 | 0.66 | 0.91182 |
Target: 5'- gUCGCcGCGAcCCCCggcGCCCCGCc--- -3' miRNA: 3'- gAGUGuUGUUuGGGG---CGGGGCGuagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 111082 | 0.66 | 0.91182 |
Target: 5'- gCUCGggcgaGACGGACCCC-CCCgGgGUCAg -3' miRNA: 3'- -GAGUg----UUGUUUGGGGcGGGgCgUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 145963 | 0.66 | 0.91182 |
Target: 5'- -cCACccACcuACCCCGCgCCCGCAg-- -3' miRNA: 3'- gaGUGu-UGuuUGGGGCG-GGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 128821 | 0.66 | 0.91182 |
Target: 5'- -aCGCGuucgaccccGCGGACCCCGgcgcCCCCGCGg-- -3' miRNA: 3'- gaGUGU---------UGUUUGGGGC----GGGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 127770 | 0.66 | 0.91182 |
Target: 5'- -gCGCcccGCGGACCCCGC-CCGCGa-- -3' miRNA: 3'- gaGUGu--UGUUUGGGGCGgGGCGUagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 126302 | 0.66 | 0.91182 |
Target: 5'- --gACGGCGccgucuccgGAgCCCGCCCCGgGUCc -3' miRNA: 3'- gagUGUUGU---------UUgGGGCGGGGCgUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 102236 | 0.66 | 0.91182 |
Target: 5'- gCUCGgGGCGGGCCUCGCCCgGg---- -3' miRNA: 3'- -GAGUgUUGUUUGGGGCGGGgCguagu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 145757 | 0.67 | 0.905693 |
Target: 5'- -cCACGGC--ACCCCcCCCCGCcgCc -3' miRNA: 3'- gaGUGUUGuuUGGGGcGGGGCGuaGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 4152 | 0.67 | 0.905693 |
Target: 5'- cCUCGCgGGCAc-CCCCGCCuCCuCGUCGu -3' miRNA: 3'- -GAGUG-UUGUuuGGGGCGG-GGcGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 106526 | 0.67 | 0.905067 |
Target: 5'- cCUCgaACAGCGAGCgacccugcagcgaCCCGCUCaucaGCGUCAg -3' miRNA: 3'- -GAG--UGUUGUUUG-------------GGGCGGGg---CGUAGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 22850 | 0.67 | 0.905067 |
Target: 5'- -cCACccCGAACCCggaccguCGCCCCGCcgCGc -3' miRNA: 3'- gaGUGuuGUUUGGG-------GCGGGGCGuaGU- -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 146764 | 0.67 | 0.899327 |
Target: 5'- --aGCc-CGAGCCCCGCCCgCGUGUUg -3' miRNA: 3'- gagUGuuGUUUGGGGCGGG-GCGUAGu -5' |
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5301 | 5' | -55.1 | NC_001798.1 | + | 59085 | 0.67 | 0.899327 |
Target: 5'- --aACGACAGACCCCacgaaGCCCaGCGUg- -3' miRNA: 3'- gagUGUUGUUUGGGG-----CGGGgCGUAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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