Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5303 | 3' | -54.7 | NC_001798.1 | + | 85223 | 0.68 | 0.865865 |
Target: 5'- aGGACGuGGAGAgcgacgucgcgccCGCCCCcCCGCGg-- -3' miRNA: 3'- aCCUGU-CUUUU-------------GCGGGGaGGCGCauc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 142960 | 0.68 | 0.858986 |
Target: 5'- cGGGCAGAGc-CGCCCauccgaggaCCGCGUGu -3' miRNA: 3'- aCCUGUCUUuuGCGGGga-------GGCGCAUc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 97573 | 0.68 | 0.874039 |
Target: 5'- aGGACGGGGAGCgcgGCCCCgagCCagggGCGcAGg -3' miRNA: 3'- aCCUGUCUUUUG---CGGGGa--GG----CGCaUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 97497 | 0.68 | 0.874039 |
Target: 5'- gGGGCcgaGGAGGAagaGCCCCgggccgCCGCGgAGg -3' miRNA: 3'- aCCUG---UCUUUUg--CGGGGa-----GGCGCaUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 146430 | 0.68 | 0.894961 |
Target: 5'- cGGGCAGAGugcggaGCCCCcggagcCCGCGg-- -3' miRNA: 3'- aCCUGUCUUuug---CGGGGa-----GGCGCauc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 91104 | 0.68 | 0.894961 |
Target: 5'- gUGGACcccGGu--GCGCUgCUCCGCGgGGg -3' miRNA: 3'- -ACCUG---UCuuuUGCGGgGAGGCGCaUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 51755 | 0.68 | 0.888214 |
Target: 5'- cGGGCA-AAAACcaGCCCCUcCCGCGcgaUGGg -3' miRNA: 3'- aCCUGUcUUUUG--CGGGGA-GGCGC---AUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 147532 | 0.68 | 0.888214 |
Target: 5'- cGuGugAGAGAgcGCGCCCCUCgaacgccgCGCGUu- -3' miRNA: 3'- aC-CugUCUUU--UGCGGGGAG--------GCGCAuc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 70001 | 0.68 | 0.888214 |
Target: 5'- cGGGC-GAuacuuaGCCCCUCCGUaUAGg -3' miRNA: 3'- aCCUGuCUuuug--CGGGGAGGCGcAUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 32562 | 0.68 | 0.887527 |
Target: 5'- cGGACcugcugcGGGccGCGgCCC-CCGCGUGGa -3' miRNA: 3'- aCCUG-------UCUuuUGCgGGGaGGCGCAUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 32243 | 0.68 | 0.881239 |
Target: 5'- gGGGCugguGGGAGCGUCgCgUCCGCGUc- -3' miRNA: 3'- aCCUGu---CUUUUGCGG-GgAGGCGCAuc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 39416 | 0.69 | 0.817838 |
Target: 5'- gGGAcCGGGGcGCGgCCgUCCGCGUGc -3' miRNA: 3'- aCCU-GUCUUuUGCgGGgAGGCGCAUc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 138775 | 0.69 | 0.823879 |
Target: 5'- gGGGCAGcgugugcugccugaGAAACGCCCCcaggcgCUGCGUc- -3' miRNA: 3'- aCCUGUC--------------UUUUGCGGGGa-----GGCGCAuc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 101966 | 0.69 | 0.838183 |
Target: 5'- cGGAUAGAGGAgGCCCCgggggggcgaugugCgGCGgcGg -3' miRNA: 3'- aCCUGUCUUUUgCGGGGa-------------GgCGCauC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 117744 | 0.69 | 0.843102 |
Target: 5'- cGGcCAGAGcgacccGGCGCgCCCUUCGCGg-- -3' miRNA: 3'- aCCuGUCUU------UUGCG-GGGAGGCGCauc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 23907 | 0.69 | 0.843102 |
Target: 5'- cGGGCccgguucgAGGccucGGGCGCCCCggcgcCCGUGUGGg -3' miRNA: 3'- aCCUG--------UCU----UUUGCGGGGa----GGCGCAUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 30736 | 0.69 | 0.843102 |
Target: 5'- -cGAUAGuGAACGaCCCCcggacCCGCGUGGa -3' miRNA: 3'- acCUGUCuUUUGC-GGGGa----GGCGCAUC- -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 69217 | 0.69 | 0.850349 |
Target: 5'- aGGGCcaaaaGGAGCGCCCCggccggcUCCGCGUu- -3' miRNA: 3'- aCCUGuc---UUUUGCGGGG-------AGGCGCAuc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 52297 | 0.69 | 0.851145 |
Target: 5'- gUGGAgCAGGAGGCGCUgUUUCGCGc-- -3' miRNA: 3'- -ACCU-GUCUUUUGCGGgGAGGCGCauc -5' |
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5303 | 3' | -54.7 | NC_001798.1 | + | 39502 | 0.69 | 0.851145 |
Target: 5'- cGGGCccccGGAGACGucgagcugcuCCCCUCCGCGc-- -3' miRNA: 3'- aCCUGu---CUUUUGC----------GGGGAGGCGCauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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