miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5304 5' -54.8 NC_001798.1 + 41371 0.67 0.924074
Target:  5'- gCGGCUCauGG-CGCCGGggaugGCCGGGa -3'
miRNA:   3'- gGUCGGG--CCaGUGGUCaaaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 43697 0.67 0.924074
Target:  5'- aCGGCCCGGagAUgcGUg--GCCAGGc -3'
miRNA:   3'- gGUCGGGCCagUGguCAaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 138747 0.67 0.918514
Target:  5'- gCGGCCCcggcgaccGUgGCCAGc--UGCCGGGg -3'
miRNA:   3'- gGUCGGGc-------CAgUGGUCaaaACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 134266 0.67 0.918514
Target:  5'- gCGGCCCuGGagCGCCAGacggGCCGGu -3'
miRNA:   3'- gGUCGGG-CCa-GUGGUCaaaaCGGUCc -5'
5304 5' -54.8 NC_001798.1 + 14816 0.67 0.912716
Target:  5'- cCCcGCCCGGccgCGCCaaAGUUgugcUGCCaAGGc -3'
miRNA:   3'- -GGuCGGGCCa--GUGG--UCAAa---ACGG-UCC- -5'
5304 5' -54.8 NC_001798.1 + 125301 0.67 0.912716
Target:  5'- gCCAccGCCCG--CACCAGcucggggGCCAGGa -3'
miRNA:   3'- -GGU--CGGGCcaGUGGUCaaaa---CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 12296 0.67 0.912124
Target:  5'- -aGGCCCaGGaUCGCCAGgcccugcagcgagcgGCCGGGc -3'
miRNA:   3'- ggUCGGG-CC-AGUGGUCaaaa-----------CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 26229 0.67 0.906682
Target:  5'- gCCAuggcGCCCGGcgCGCCGGacUUcUGCgAGGa -3'
miRNA:   3'- -GGU----CGGGCCa-GUGGUC--AAaACGgUCC- -5'
5304 5' -54.8 NC_001798.1 + 114457 0.68 0.900413
Target:  5'- uUCAGCCUGGcCACCgAGgccaUUGCCcugcucacGGGg -3'
miRNA:   3'- -GGUCGGGCCaGUGG-UCaa--AACGG--------UCC- -5'
5304 5' -54.8 NC_001798.1 + 136573 0.68 0.899774
Target:  5'- gCCGGCCgGGUuauaggcCACaCAGUccgUGCgGGGg -3'
miRNA:   3'- -GGUCGGgCCA-------GUG-GUCAaa-ACGgUCC- -5'
5304 5' -54.8 NC_001798.1 + 1901 0.68 0.893913
Target:  5'- gCAGCCCcaggaacuccacGG-CGCCGGcgaagGCCAGGu -3'
miRNA:   3'- gGUCGGG------------CCaGUGGUCaaaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 114685 0.68 0.893913
Target:  5'- --cGCCUGGcgACCAGggUUGCCcGGg -3'
miRNA:   3'- gguCGGGCCagUGGUCaaAACGGuCC- -5'
5304 5' -54.8 NC_001798.1 + 29778 0.68 0.893913
Target:  5'- cCCGGCCCGG-CACgAGcuc--CCGGGc -3'
miRNA:   3'- -GGUCGGGCCaGUGgUCaaaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 83759 0.68 0.891248
Target:  5'- aCAGCCCcGcCGCCAGcaacagaagcGCCGGGg -3'
miRNA:   3'- gGUCGGGcCaGUGGUCaaaa------CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 27765 0.68 0.887184
Target:  5'- aCGGCCCGGgcugcgcaCGCCA-----GCCGGGa -3'
miRNA:   3'- gGUCGGGCCa-------GUGGUcaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 68775 0.68 0.88023
Target:  5'- gCCuGCCCgGGUgGCCGGUgugugugGCCuccuGGg -3'
miRNA:   3'- -GGuCGGG-CCAgUGGUCAaaa----CGGu---CC- -5'
5304 5' -54.8 NC_001798.1 + 57454 0.68 0.873055
Target:  5'- -gGGCCCGGUCuuggggggcgggGCCGGUUUgGCgGuGGa -3'
miRNA:   3'- ggUCGGGCCAG------------UGGUCAAAaCGgU-CC- -5'
5304 5' -54.8 NC_001798.1 + 33452 0.69 0.858066
Target:  5'- aCCGGCgCGaa-GCCAGgg--GCCAGGg -3'
miRNA:   3'- -GGUCGgGCcagUGGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 5958 0.69 0.858066
Target:  5'- gCCGGCgucCCGGUCGCCGccgca-CCAGGg -3'
miRNA:   3'- -GGUCG---GGCCAGUGGUcaaaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 74390 0.69 0.842262
Target:  5'- uCCGGCCCGGggGCC-GUggcGCCGGcGg -3'
miRNA:   3'- -GGUCGGGCCagUGGuCAaaaCGGUC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.