miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
5305	3'	-51.7	NC_001798.1	+	46345	0.66	0.987647
	Target:  5'- --cGUGcUCGGUGGUcaCCUGCGuuagcucgCCCg -3' miRNA:   3'- aaaCAU-AGCUACCAc-GGACGCua------GGG- -5'
5305	3'	-51.7	NC_001798.1	+	61681	0.66	0.986002
	Target:  5'- gUUGUGUUcg-GG-GCCaagGCGAUCCUg -3' miRNA:   3'- aAACAUAGcuaCCaCGGa--CGCUAGGG- -5'
5305	3'	-51.7	NC_001798.1	+	108960	0.66	0.986002
	Target:  5'- ----gAUCauaGUGGUGCCUGCGGacaagaCCCu -3' miRNA:   3'- aaacaUAGc--UACCACGGACGCUa-----GGG- -5'
5305	3'	-51.7	NC_001798.1	+	106060	0.67	0.972405
	Target:  5'- --cGUGUCGGggagGGggGCCuuUGCGGUCUg -3' miRNA:   3'- aaaCAUAGCUa---CCa-CGG--ACGCUAGGg -5'
5305	3'	-51.7	NC_001798.1	+	23554	0.67	0.972405
	Target:  5'- --aGg--CGggGGUGCCcGCGAgggCCCc -3' miRNA:   3'- aaaCauaGCuaCCACGGaCGCUa--GGG- -5'
5305	3'	-51.7	NC_001798.1	+	134641	0.7	0.915161
	Target:  5'- -gUGUG-CGA-GGUcgGCCUGCGGcCCCg -3' miRNA:   3'- aaACAUaGCUaCCA--CGGACGCUaGGG- -5'
5305	3'	-51.7	NC_001798.1	+	114024	0.76	0.603367
	Target:  5'- --cGgcUUGAUGGaGCCUGCGaAUCCCc -3' miRNA:   3'- aaaCauAGCUACCaCGGACGC-UAGGG- -5'
5305	3'	-51.7	NC_001798.1	+	17359	1.11	0.005115
	Target:  5'- gUUUGUAUCGAUGGUGCCUGCGAUCCCg -3' miRNA:   3'- -AAACAUAGCUACCACGGACGCUAGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home