miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5305 5' -60.1 NC_001798.1 + 98540 0.66 0.765673
Target:  5'- gGGGGGCUUGAUUuGCGCgCUggucguggggGCGCugGu -3'
miRNA:   3'- -UCCCCGAGCUAGcUGUG-GG----------CGCGugU- -5'
5305 5' -60.1 NC_001798.1 + 26335 0.66 0.765673
Target:  5'- uGGGGCg----CGACG-CCGUGCGCGg -3'
miRNA:   3'- uCCCCGagcuaGCUGUgGGCGCGUGU- -5'
5305 5' -60.1 NC_001798.1 + 2607 0.66 0.765673
Target:  5'- gGGGGGCgCGGggCGcCGCCCgGCgGCGCc -3'
miRNA:   3'- -UCCCCGaGCUa-GCuGUGGG-CG-CGUGu -5'
5305 5' -60.1 NC_001798.1 + 84423 0.66 0.765673
Target:  5'- uAGGGGCcCGAcUCcccACcCCCGCcGCGCAg -3'
miRNA:   3'- -UCCCCGaGCU-AGc--UGuGGGCG-CGUGU- -5'
5305 5' -60.1 NC_001798.1 + 137339 0.66 0.764754
Target:  5'- uGGGG-UCGGccaucccugcguUCGACGCCCcagcccugguccgGCGCACc -3'
miRNA:   3'- uCCCCgAGCU------------AGCUGUGGG-------------CGCGUGu -5'
5305 5' -60.1 NC_001798.1 + 3390 0.66 0.763834
Target:  5'- cGGGGGUUCGcgccccgGUCaGCGCCgcguucuCGCGCGCc -3'
miRNA:   3'- -UCCCCGAGC-------UAGcUGUGG-------GCGCGUGu -5'
5305 5' -60.1 NC_001798.1 + 56002 0.66 0.756435
Target:  5'- gAGGGGCUgGuaggCGGguCCCGaaGCACGg -3'
miRNA:   3'- -UCCCCGAgCua--GCUguGGGCg-CGUGU- -5'
5305 5' -60.1 NC_001798.1 + 31570 0.66 0.756435
Target:  5'- cGGGGCgCGccgCG-CGCCCcCGCGCGg -3'
miRNA:   3'- uCCCCGaGCua-GCuGUGGGcGCGUGU- -5'
5305 5' -60.1 NC_001798.1 + 104602 0.66 0.756435
Target:  5'- cGGGGCcgcCGGUa-GCACCCcgugGCGCACc -3'
miRNA:   3'- uCCCCGa--GCUAgcUGUGGG----CGCGUGu -5'
5305 5' -60.1 NC_001798.1 + 149247 0.66 0.756435
Target:  5'- cGGGGGCgucgcCGGcCGGCGCggGCGCGCc -3'
miRNA:   3'- -UCCCCGa----GCUaGCUGUGggCGCGUGu -5'
5305 5' -60.1 NC_001798.1 + 85040 0.66 0.756435
Target:  5'- cGGGGGUgCcGUCGAgCGCcgCCGUGCGCGa -3'
miRNA:   3'- -UCCCCGaGcUAGCU-GUG--GGCGCGUGU- -5'
5305 5' -60.1 NC_001798.1 + 153122 0.66 0.753643
Target:  5'- cGGGGCUCccaucgucucuucgGAgagCGGC-CUCGCGCAg- -3'
miRNA:   3'- uCCCCGAG--------------CUa--GCUGuGGGCGCGUgu -5'
5305 5' -60.1 NC_001798.1 + 123469 0.66 0.747093
Target:  5'- cGGGGCcCGAagcCGAC-CUCGuCGCGCGc -3'
miRNA:   3'- uCCCCGaGCUa--GCUGuGGGC-GCGUGU- -5'
5305 5' -60.1 NC_001798.1 + 83978 0.66 0.746153
Target:  5'- gAGGGccuGCUCGG-CGGCGCgacacaggauccgCCGCGUGCGa -3'
miRNA:   3'- -UCCC---CGAGCUaGCUGUG-------------GGCGCGUGU- -5'
5305 5' -60.1 NC_001798.1 + 83788 0.66 0.746153
Target:  5'- gGGGGGCcCGGacgCGGgGCCCGgaacaacUGCACGg -3'
miRNA:   3'- -UCCCCGaGCUa--GCUgUGGGC-------GCGUGU- -5'
5305 5' -60.1 NC_001798.1 + 141460 0.66 0.737656
Target:  5'- cGGGGCUgCGAgcugcUGACcgGCUCGCcGCGCGg -3'
miRNA:   3'- uCCCCGA-GCUa----GCUG--UGGGCG-CGUGU- -5'
5305 5' -60.1 NC_001798.1 + 3790 0.66 0.737656
Target:  5'- cGGGGCgccCGAggccUCGAaccggGCCCGCGCc-- -3'
miRNA:   3'- uCCCCGa--GCU----AGCUg----UGGGCGCGugu -5'
5305 5' -60.1 NC_001798.1 + 53943 0.66 0.737656
Target:  5'- -cGGGCUCGAUgcagugcaUGGC-CCUGCGgGCGg -3'
miRNA:   3'- ucCCCGAGCUA--------GCUGuGGGCGCgUGU- -5'
5305 5' -60.1 NC_001798.1 + 74583 0.66 0.737656
Target:  5'- -cGGGCcCGGUCGuC-CCCGCGCu-- -3'
miRNA:   3'- ucCCCGaGCUAGCuGuGGGCGCGugu -5'
5305 5' -60.1 NC_001798.1 + 61173 0.66 0.737656
Target:  5'- gGGGGGaagagagagaUGGUCGgccuGCACCgGCGCGCGc -3'
miRNA:   3'- -UCCCCga--------GCUAGC----UGUGGgCGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.