miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 3' -55.6 NC_001798.1 + 110995 0.67 0.8906
Target:  5'- cCGUCAgGCGcGCgGUAUGCGUggccGCGg -3'
miRNA:   3'- uGCAGUgUGCcCGgCGUAUGCAa---CGC- -5'
5306 3' -55.6 NC_001798.1 + 2231 0.67 0.883774
Target:  5'- gGCG-CGCAgCGGGCCGaagGCGgcggGCGc -3'
miRNA:   3'- -UGCaGUGU-GCCCGGCguaUGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 49631 0.67 0.876725
Target:  5'- cGCGagaUCcUAUGGGCCGCGUACGccgaGCa -3'
miRNA:   3'- -UGC---AGuGUGCCCGGCGUAUGCaa--CGc -5'
5306 3' -55.6 NC_001798.1 + 42747 0.67 0.86946
Target:  5'- cCGUCGCccgcacagACGGGCgGCGcGCGggGCc -3'
miRNA:   3'- uGCAGUG--------UGCCCGgCGUaUGCaaCGc -5'
5306 3' -55.6 NC_001798.1 + 2504 0.67 0.86946
Target:  5'- cGCGggGCGCGgcGGCCGCGgcggcgGCGUcgGCGg -3'
miRNA:   3'- -UGCagUGUGC--CCGGCGUa-----UGCAa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 24576 0.67 0.86946
Target:  5'- gGCG-CGCggagGCGGGCCGCGUGgcCGUggagUGCc -3'
miRNA:   3'- -UGCaGUG----UGCCCGGCGUAU--GCA----ACGc -5'
5306 3' -55.6 NC_001798.1 + 133024 0.67 0.868722
Target:  5'- gACGUCGCGCcGGCCGagguggucgcgcuCAUGCGcgGCc -3'
miRNA:   3'- -UGCAGUGUGcCCGGC-------------GUAUGCaaCGc -5'
5306 3' -55.6 NC_001798.1 + 139536 0.67 0.867239
Target:  5'- gACGUCACGCaGGuGCCGCGccUgcagugguuccgggACGUgGCGg -3'
miRNA:   3'- -UGCAGUGUG-CC-CGGCGU--A--------------UGCAaCGC- -5'
5306 3' -55.6 NC_001798.1 + 52156 0.68 0.861983
Target:  5'- uGCGUgcuccCGCGgGaGGCCGCGUuuGCGggGCGc -3'
miRNA:   3'- -UGCA-----GUGUgC-CCGGCGUA--UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 106218 0.68 0.861224
Target:  5'- -gGUCACGCGGcugacgcGCaGCGUACGcUGCGc -3'
miRNA:   3'- ugCAGUGUGCC-------CGgCGUAUGCaACGC- -5'
5306 3' -55.6 NC_001798.1 + 1125 0.68 0.8543
Target:  5'- cAUGUC-CACGGGCuCGCGccucgGCGgcGUGg -3'
miRNA:   3'- -UGCAGuGUGCCCG-GCGUa----UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 98565 0.68 0.8543
Target:  5'- gUGggggCGCugGuGGCCGCGgugGCGUcgGCGg -3'
miRNA:   3'- uGCa---GUGugC-CCGGCGUa--UGCAa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 29384 0.68 0.846416
Target:  5'- gGCGggcacCACucaGGGCCGCGccgGCGggGCGc -3'
miRNA:   3'- -UGCa----GUGug-CCCGGCGUa--UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 48345 0.68 0.841593
Target:  5'- gACGUCgACGCgaccgcggccgcccgGGGCCGCcccGCGggGCGu -3'
miRNA:   3'- -UGCAG-UGUG---------------CCCGGCGua-UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 25738 0.68 0.83834
Target:  5'- gACGUCucgGCGCuGGGCgCGCAggGCGUgcUGCu -3'
miRNA:   3'- -UGCAG---UGUG-CCCG-GCGUa-UGCA--ACGc -5'
5306 3' -55.6 NC_001798.1 + 84721 0.68 0.83834
Target:  5'- cACG-CACGCGGuGuCCuGCGUAUGUgggGCGg -3'
miRNA:   3'- -UGCaGUGUGCC-C-GG-CGUAUGCAa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 154278 0.68 0.83834
Target:  5'- gGCGUgCGCAgccCGGGCCGU----GUUGCGg -3'
miRNA:   3'- -UGCA-GUGU---GCCCGGCGuaugCAACGC- -5'
5306 3' -55.6 NC_001798.1 + 146554 0.68 0.830077
Target:  5'- uACGUgGcCGCGGGCCaGCAgACGggccGCGg -3'
miRNA:   3'- -UGCAgU-GUGCCCGG-CGUaUGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 112195 0.68 0.830077
Target:  5'- cACGUCcCGCaGGCCGCGcugGCGgaGCu -3'
miRNA:   3'- -UGCAGuGUGcCCGGCGUa--UGCaaCGc -5'
5306 3' -55.6 NC_001798.1 + 26363 0.68 0.830077
Target:  5'- gGCGgagCuGCGCGGGCCGCG-GCGggaguucUGCGc -3'
miRNA:   3'- -UGCa--G-UGUGCCCGGCGUaUGCa------ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.