miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 5' -58.7 NC_001798.1 + 153951 0.66 0.809579
Target:  5'- aGCCAGcgCCGCaggagcgaggacgcgGCCGGC-GCGCUc -3'
miRNA:   3'- -CGGUUuaGGCGca-------------UGGCCGcCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 153690 0.66 0.80353
Target:  5'- cGCgGGggCCGCc-GCCGGCGcaggcucaggcGCGCCAg -3'
miRNA:   3'- -CGgUUuaGGCGcaUGGCCGC-----------CGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 103284 0.66 0.80353
Target:  5'- aGCgCGGGUCCGCGgcGCUcaaaaauaGCGGCGCUg -3'
miRNA:   3'- -CG-GUUUAGGCGCa-UGGc-------CGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 92478 0.66 0.80353
Target:  5'- aGCCc-GUCCGUuUACgucuuucaCGGCGGcCGCCAc -3'
miRNA:   3'- -CGGuuUAGGCGcAUG--------GCCGCC-GCGGU- -5'
5306 5' -58.7 NC_001798.1 + 81708 0.66 0.80353
Target:  5'- cGCCGcuuucuccgCCGcCGUGCCGcGCGuGCGCa- -3'
miRNA:   3'- -CGGUuua------GGC-GCAUGGC-CGC-CGCGgu -5'
5306 5' -58.7 NC_001798.1 + 153056 0.66 0.800914
Target:  5'- gGCCGGcgCCgcccccuggggcggGCGgagcgGCgGgGCGGCGCCGg -3'
miRNA:   3'- -CGGUUuaGG--------------CGCa----UGgC-CGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 77764 0.66 0.800914
Target:  5'- cGCCGAGUUCGaCGUggucgagcugcgccGCCuGCaGGCGCUg -3'
miRNA:   3'- -CGGUUUAGGC-GCA--------------UGGcCG-CCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 1259 0.66 0.800914
Target:  5'- gGCCcgcGUCCGCGUcgucgcgcagcaccAgCGGgGGCGCg- -3'
miRNA:   3'- -CGGuu-UAGGCGCA--------------UgGCCgCCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 26345 0.66 0.794762
Target:  5'- cGCCGugcgCgGCGgcCCGGCGGaGCUg -3'
miRNA:   3'- -CGGUuua-GgCGCauGGCCGCCgCGGu -5'
5306 5' -58.7 NC_001798.1 + 42737 0.66 0.794762
Target:  5'- gGCCGAGggcccgucgcCCGCacagACgGGCGGCGCgCGg -3'
miRNA:   3'- -CGGUUUa---------GGCGca--UGgCCGCCGCG-GU- -5'
5306 5' -58.7 NC_001798.1 + 128813 0.66 0.794762
Target:  5'- aGCCAAGUacgcguucgaccCCGCGgACCc-CGGCGCCc -3'
miRNA:   3'- -CGGUUUA------------GGCGCaUGGccGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 132143 0.66 0.794762
Target:  5'- cGCCg---CCGgGgGCCGGCgggcggGGCGCCc -3'
miRNA:   3'- -CGGuuuaGGCgCaUGGCCG------CCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 24824 0.66 0.785853
Target:  5'- cGCgGGGaccUgCGCGUgGCCGGCGGCagcgagGCCGc -3'
miRNA:   3'- -CGgUUU---AgGCGCA-UGGCCGCCG------CGGU- -5'
5306 5' -58.7 NC_001798.1 + 25239 0.66 0.785853
Target:  5'- cGCCGAGggccccgacCCGCagGgCGGCuGGCGCCGc -3'
miRNA:   3'- -CGGUUUa--------GGCGcaUgGCCG-CCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 26515 0.66 0.785853
Target:  5'- uGCUgg--CCGCGgcgGgCGGCGGCGUgGa -3'
miRNA:   3'- -CGGuuuaGGCGCa--UgGCCGCCGCGgU- -5'
5306 5' -58.7 NC_001798.1 + 39838 0.66 0.785853
Target:  5'- gGCUccccgCCGCGcUGCCGGgcgaGGCGUCGa -3'
miRNA:   3'- -CGGuuua-GGCGC-AUGGCCg---CCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 70560 0.66 0.785853
Target:  5'- cGCCGGG-CUGCGcACCacGGCGGCccugggGCCGg -3'
miRNA:   3'- -CGGUUUaGGCGCaUGG--CCGCCG------CGGU- -5'
5306 5' -58.7 NC_001798.1 + 104776 0.66 0.785853
Target:  5'- cGCCAGGUagCGCGga--GGCGG-GCCAg -3'
miRNA:   3'- -CGGUUUAg-GCGCauggCCGCCgCGGU- -5'
5306 5' -58.7 NC_001798.1 + 118658 0.66 0.785853
Target:  5'- uGCCGAccAUCCGCc-GCCaGCuGGCGCUc -3'
miRNA:   3'- -CGGUU--UAGGCGcaUGGcCG-CCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 21720 0.66 0.785853
Target:  5'- cGCCGcgcagCCgGUGUGCCccuggugcGGCGGCGaCCGg -3'
miRNA:   3'- -CGGUuua--GG-CGCAUGG--------CCGCCGC-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.