miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5307 3' -52.2 NC_001798.1 + 12891 0.66 0.990744
Target:  5'- gGGUGCugGUGUACGgggGcUugGGgCCGUGCc -3'
miRNA:   3'- -CCAUG--CACAUGCa--C-AugCUgGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 102882 0.66 0.990744
Target:  5'- aGGUACGUGUguccgGCGauccCGGCCUGC-Cg -3'
miRNA:   3'- -CCAUGCACA-----UGCacauGCUGGGCGuG- -5'
5307 3' -52.2 NC_001798.1 + 135334 0.66 0.990622
Target:  5'- uGGUGCcgg-ACGcGUGCGAcgccugcCCCGCGCu -3'
miRNA:   3'- -CCAUGcacaUGCaCAUGCU-------GGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 13360 0.66 0.98999
Target:  5'- aGGU---UGUACGUGUGCuuucgggccucguccGAagcCCCGCGCa -3'
miRNA:   3'- -CCAugcACAUGCACAUG---------------CU---GGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 144741 0.66 0.988041
Target:  5'- --gACGgGUGCGUGgcugACGGCCUGUu- -3'
miRNA:   3'- ccaUGCaCAUGCACa---UGCUGGGCGug -5'
5307 3' -52.2 NC_001798.1 + 134633 0.66 0.984764
Target:  5'- uGGUcgAgGUGUGCGagGU-CGGCCUGCGg -3'
miRNA:   3'- -CCA--UgCACAUGCa-CAuGCUGGGCGUg -5'
5307 3' -52.2 NC_001798.1 + 143386 0.67 0.982889
Target:  5'- --cACGUGcGCGUccgGUGCGGucCCCGCAa -3'
miRNA:   3'- ccaUGCACaUGCA---CAUGCU--GGGCGUg -5'
5307 3' -52.2 NC_001798.1 + 153759 0.67 0.982889
Target:  5'- aGGUgggGCGgaagGggGCGc-UGCGGCCCGCGCu -3'
miRNA:   3'- -CCA---UGCa---Ca-UGCacAUGCUGGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 14940 0.67 0.982889
Target:  5'- aGGgggAUGUGUugGggUGUGgGGCCCGagGCa -3'
miRNA:   3'- -CCa--UGCACAugC--ACAUgCUGGGCg-UG- -5'
5307 3' -52.2 NC_001798.1 + 131122 0.67 0.982092
Target:  5'- cGUACGUGgccagcaggcucUGCGUGUccaaccggagggggACGGcuacaccCCCGCGCa -3'
miRNA:   3'- cCAUGCAC------------AUGCACA--------------UGCU-------GGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 92960 0.67 0.976217
Target:  5'- -cUGCGUGcccggaACGUGgACGccgugGCCCGCGCg -3'
miRNA:   3'- ccAUGCACa-----UGCACaUGC-----UGGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 108861 0.68 0.967812
Target:  5'- cGGgcugGCGUu--CGgGUGCGACgCCGCGCu -3'
miRNA:   3'- -CCa---UGCAcauGCaCAUGCUG-GGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 121556 0.68 0.964592
Target:  5'- --gGCGUGgggccCGUGgGCGACCUGUGCc -3'
miRNA:   3'- ccaUGCACau---GCACaUGCUGGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 74295 0.68 0.957491
Target:  5'- aGGUGCGggcgGgcgACGUGU---ACCCGUACc -3'
miRNA:   3'- -CCAUGCa---Ca--UGCACAugcUGGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 37139 0.68 0.957491
Target:  5'- aGGUGUGUGaGCGUGgcCG-CUCGCGCc -3'
miRNA:   3'- -CCAUGCACaUGCACauGCuGGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 119518 0.69 0.94511
Target:  5'- gGGgcagGCGUGUugGgaaGgGACCCGCGg -3'
miRNA:   3'- -CCa---UGCACAugCacaUgCUGGGCGUg -5'
5307 3' -52.2 NC_001798.1 + 120780 0.69 0.94511
Target:  5'- cGUugGUGUGCGUc-ACcACCCGCGg -3'
miRNA:   3'- cCAugCACAUGCAcaUGcUGGGCGUg -5'
5307 3' -52.2 NC_001798.1 + 83508 0.7 0.907779
Target:  5'- --aGCGuUGUugGUGgccaacACGAgCCCGCGCa -3'
miRNA:   3'- ccaUGC-ACAugCACa-----UGCU-GGGCGUG- -5'
5307 3' -52.2 NC_001798.1 + 140205 0.71 0.895597
Target:  5'- cGGUGCugGUGUGCGUGgggucgccgacccagACGGCCuCGCu- -3'
miRNA:   3'- -CCAUG--CACAUGCACa--------------UGCUGG-GCGug -5'
5307 3' -52.2 NC_001798.1 + 92252 0.71 0.888155
Target:  5'- gGGgccgAUGggGUACGUGUAUGG-CCGCGCc -3'
miRNA:   3'- -CCa---UGCa-CAUGCACAUGCUgGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.