miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5307 5' -62.6 NC_001798.1 + 78831 0.66 0.68985
Target:  5'- cGACGGCcccggccccuggcgcGGCaCGCCgGCCGCcugggGGCGCUc -3'
miRNA:   3'- cCUGCCG---------------CCGaGCGG-CGGCG-----CUGUGG- -5'
5307 5' -62.6 NC_001798.1 + 97328 0.66 0.686047
Target:  5'- cGGCGGCcaGGCgaCGUCGCC-CGACgAUCa -3'
miRNA:   3'- cCUGCCG--CCGa-GCGGCGGcGCUG-UGG- -5'
5307 5' -62.6 NC_001798.1 + 1876 0.66 0.686047
Target:  5'- aGGCGGCGGUcgcaggCGCCGgCCaGCaGCcCCa -3'
miRNA:   3'- cCUGCCGCCGa-----GCGGC-GG-CGcUGuGG- -5'
5307 5' -62.6 NC_001798.1 + 2985 0.66 0.686047
Target:  5'- gGGGCGGcCGGCcCGCgggccccgggCGCgGgGGCGCg -3'
miRNA:   3'- -CCUGCC-GCCGaGCG----------GCGgCgCUGUGg -5'
5307 5' -62.6 NC_001798.1 + 34779 0.66 0.686047
Target:  5'- cGGAacGCGGaaaCGCCGCCggcGCGGC-CCg -3'
miRNA:   3'- -CCUgcCGCCga-GCGGCGG---CGCUGuGG- -5'
5307 5' -62.6 NC_001798.1 + 43043 0.66 0.686047
Target:  5'- cGGGCGcaaauGCGGCgcgugaGCCGCCGgcCGAgCGCg -3'
miRNA:   3'- -CCUGC-----CGCCGag----CGGCGGC--GCU-GUGg -5'
5307 5' -62.6 NC_001798.1 + 66902 0.66 0.686047
Target:  5'- gGGGCGG-GGC-CGUCGCUccaucuGCGACGa- -3'
miRNA:   3'- -CCUGCCgCCGaGCGGCGG------CGCUGUgg -5'
5307 5' -62.6 NC_001798.1 + 84890 0.66 0.686047
Target:  5'- aGACGGCcGCgucccccgCGCCGUcuCGCGAgACg -3'
miRNA:   3'- cCUGCCGcCGa-------GCGGCG--GCGCUgUGg -5'
5307 5' -62.6 NC_001798.1 + 143876 0.66 0.686047
Target:  5'- uGGA--GUGGgaCGCCGCCGCcccGCGCUu -3'
miRNA:   3'- -CCUgcCGCCgaGCGGCGGCGc--UGUGG- -5'
5307 5' -62.6 NC_001798.1 + 150169 0.66 0.686047
Target:  5'- cGGgGGCgGGC-CGCCGCCcccuccGCGgcguggggggcgGCACCg -3'
miRNA:   3'- cCUgCCG-CCGaGCGGCGG------CGC------------UGUGG- -5'
5307 5' -62.6 NC_001798.1 + 4225 0.66 0.686047
Target:  5'- gGGGCgcgGGCGGCgUCGUCGUCGuCGuCGUCg -3'
miRNA:   3'- -CCUG---CCGCCG-AGCGGCGGC-GCuGUGG- -5'
5307 5' -62.6 NC_001798.1 + 26352 0.66 0.684143
Target:  5'- -cGCGGCGGCccggcggagcugCGCgGgCCGCGGCGg- -3'
miRNA:   3'- ccUGCCGCCGa-----------GCGgC-GGCGCUGUgg -5'
5307 5' -62.6 NC_001798.1 + 102895 0.66 0.676513
Target:  5'- cGGCGauccCGGCcUGCCGCCGCcGCucgGCCa -3'
miRNA:   3'- cCUGCc---GCCGaGCGGCGGCGcUG---UGG- -5'
5307 5' -62.6 NC_001798.1 + 56675 0.66 0.676513
Target:  5'- -cAUGGUgauGGUUgGCCGCgGCaGCACCg -3'
miRNA:   3'- ccUGCCG---CCGAgCGGCGgCGcUGUGG- -5'
5307 5' -62.6 NC_001798.1 + 53313 0.66 0.676513
Target:  5'- -aGCGucCGGCUgGCgG-CGCGGCACCa -3'
miRNA:   3'- ccUGCc-GCCGAgCGgCgGCGCUGUGG- -5'
5307 5' -62.6 NC_001798.1 + 1544 0.66 0.676513
Target:  5'- cGGcGCGGCGGUacUCG-CGCgGgGACAUg -3'
miRNA:   3'- -CC-UGCCGCCG--AGCgGCGgCgCUGUGg -5'
5307 5' -62.6 NC_001798.1 + 153773 0.66 0.676513
Target:  5'- gGGGCGcuGCGGCcCGCgcuccuugCGCgGCGGCGgCg -3'
miRNA:   3'- -CCUGC--CGCCGaGCG--------GCGgCGCUGUgG- -5'
5307 5' -62.6 NC_001798.1 + 52544 0.66 0.676513
Target:  5'- cGACGG-GGCUCaucCUGCaGCGGCugCu -3'
miRNA:   3'- cCUGCCgCCGAGc--GGCGgCGCUGugG- -5'
5307 5' -62.6 NC_001798.1 + 30276 0.66 0.673646
Target:  5'- gGGAUGcucaacgacaugcaGUGGCUCGCCaGCaGCGACucggaggaggagACCg -3'
miRNA:   3'- -CCUGC--------------CGCCGAGCGG-CGgCGCUG------------UGG- -5'
5307 5' -62.6 NC_001798.1 + 152628 0.66 0.666947
Target:  5'- aGAUGGgagucccccCGGCgcccCGCCGgCGCGGC-CCu -3'
miRNA:   3'- cCUGCC---------GCCGa---GCGGCgGCGCUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.