miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5308 3' -63.9 NC_001798.1 + 95683 0.66 0.600132
Target:  5'- uGGcGGCggCgGcgGGGGCGGCcGGcgucGCCCg -3'
miRNA:   3'- cCC-CCG--GgUuaCCCCGCCGuCC----UGGG- -5'
5308 3' -63.9 NC_001798.1 + 57562 0.66 0.600132
Target:  5'- cGGGGaCgCGGagGGGGCGGCAuuGCUCg -3'
miRNA:   3'- cCCCC-GgGUUa-CCCCGCCGUccUGGG- -5'
5308 3' -63.9 NC_001798.1 + 34874 0.66 0.600132
Target:  5'- ---cGCCCGGcgccGGGCGGCuacccGGGACCCc -3'
miRNA:   3'- ccccCGGGUUac--CCCGCCG-----UCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 33248 0.66 0.600132
Target:  5'- cGGGGCCCGGccucguucUGGcucccugucuuGGUGGguGGGCg- -3'
miRNA:   3'- cCCCCGGGUU--------ACC-----------CCGCCguCCUGgg -5'
5308 3' -63.9 NC_001798.1 + 24666 0.66 0.600132
Target:  5'- uGGcGGCCguGccGGGGCuGGCcGGAgCCCg -3'
miRNA:   3'- cCC-CCGGguUa-CCCCG-CCGuCCU-GGG- -5'
5308 3' -63.9 NC_001798.1 + 59528 0.66 0.600132
Target:  5'- uGGGGGUCUu-UGGGGaccccggaaGGCggagagggggcuGGGGCUCg -3'
miRNA:   3'- -CCCCCGGGuuACCCCg--------CCG------------UCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 138172 0.66 0.600132
Target:  5'- uGGGGGCgCGAccc-GCGGCcGGugCCg -3'
miRNA:   3'- -CCCCCGgGUUacccCGCCGuCCugGG- -5'
5308 3' -63.9 NC_001798.1 + 79859 0.66 0.594363
Target:  5'- uGGGGcGCCuCGAUGGacGCGGCGGccgagcuguacgucGCCCu -3'
miRNA:   3'- -CCCC-CGG-GUUACCc-CGCCGUCc-------------UGGG- -5'
5308 3' -63.9 NC_001798.1 + 7049 0.66 0.591482
Target:  5'- cGGGguuuccccGGCCCAcccccaaaccccgguUGGGGCGGgCAGccgaGACCUu -3'
miRNA:   3'- -CCC--------CCGGGUu--------------ACCCCGCC-GUC----CUGGG- -5'
5308 3' -63.9 NC_001798.1 + 26956 0.66 0.590522
Target:  5'- cGGGGGUCgGGcgggcgGGGGUcgggcgGGCGGGGgUCg -3'
miRNA:   3'- -CCCCCGGgUUa-----CCCCG------CCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 25667 0.66 0.590522
Target:  5'- uGGcGGCCC--UGGGcaacCGGCucugcGGGCCCg -3'
miRNA:   3'- cCC-CCGGGuuACCCc---GCCGu----CCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 50666 0.66 0.590522
Target:  5'- uGGGGUCCGcguauaaaGGcaGGCGcGCGGGuCCCg -3'
miRNA:   3'- cCCCCGGGUua------CC--CCGC-CGUCCuGGG- -5'
5308 3' -63.9 NC_001798.1 + 80545 0.66 0.590522
Target:  5'- --cGGCCCGGcGGGGgGGCgcgAGGcguCCCu -3'
miRNA:   3'- cccCCGGGUUaCCCCgCCG---UCCu--GGG- -5'
5308 3' -63.9 NC_001798.1 + 113751 0.66 0.590522
Target:  5'- cGGGGGUguggCGggGGGGUauuaaGGCAGGggcagcucGCCCc -3'
miRNA:   3'- -CCCCCGg---GUuaCCCCG-----CCGUCC--------UGGG- -5'
5308 3' -63.9 NC_001798.1 + 121289 0.66 0.590522
Target:  5'- cGGccGCCCcgacGGUGGGGCGGCcgcgaacuuccGGGucgaaACCCa -3'
miRNA:   3'- -CCccCGGG----UUACCCCGCCG-----------UCC-----UGGG- -5'
5308 3' -63.9 NC_001798.1 + 10879 0.66 0.590522
Target:  5'- --cGGCCCcgcgagccAUGuucGGGUGGCAGGAgCCg -3'
miRNA:   3'- cccCCGGGu-------UAC---CCCGCCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 26807 0.66 0.590522
Target:  5'- cGGGGGUCgGGcgggcgGGGGUcgggcgGGCGGGGgUCg -3'
miRNA:   3'- -CCCCCGGgUUa-----CCCCG------CCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 26852 0.66 0.590522
Target:  5'- cGGGGGUCgGGcgggcgGGGGUcgggcgGGCGGGGgUCg -3'
miRNA:   3'- -CCCCCGGgUUa-----CCCCG------CCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 26897 0.66 0.590522
Target:  5'- cGGGGGUCgGGcgggcgGGGGUcgggcgGGCGGGGgUCg -3'
miRNA:   3'- -CCCCCGGgUUa-----CCCCG------CCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 28732 0.66 0.590522
Target:  5'- -cGGGCCCGAgcccgagcccGGGCccacgaagacGGC-GGACCCg -3'
miRNA:   3'- ccCCCGGGUUac--------CCCG----------CCGuCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.