miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5308 3' -63.9 NC_001798.1 + 15948 1 0.002626
Target:  5'- cGGGGGCCCAAUGGGGCGGCA-GACCCc -3'
miRNA:   3'- -CCCCCGGGUUACCCCGCCGUcCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 57451 0.87 0.022967
Target:  5'- cGGGGGCCCGGucuUGGGG-GGCGGGGCCg -3'
miRNA:   3'- -CCCCCGGGUU---ACCCCgCCGUCCUGGg -5'
5308 3' -63.9 NC_001798.1 + 111594 0.86 0.028257
Target:  5'- gGGGGGCCCGGcGGGGCGGCcuccuGGAgCCCc -3'
miRNA:   3'- -CCCCCGGGUUaCCCCGCCGu----CCU-GGG- -5'
5308 3' -63.9 NC_001798.1 + 47862 0.82 0.052398
Target:  5'- cGGGGGCCCcGUGGGcGcCGGCGGGcGCUCg -3'
miRNA:   3'- -CCCCCGGGuUACCC-C-GCCGUCC-UGGG- -5'
5308 3' -63.9 NC_001798.1 + 9686 0.82 0.053754
Target:  5'- gGGGGGCUCucacGUGcGGGCGGguGGGCUCg -3'
miRNA:   3'- -CCCCCGGGu---UAC-CCCGCCguCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 41448 0.8 0.077468
Target:  5'- gGGGGGUCCAugccccgccggggGGGGCGGUcggcGGGCCCa -3'
miRNA:   3'- -CCCCCGGGUua-----------CCCCGCCGu---CCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 4088 0.79 0.086966
Target:  5'- cGGGGGUCCGGgccGGGGCGGgCucGGCCCu -3'
miRNA:   3'- -CCCCCGGGUUa--CCCCGCC-GucCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 84729 0.77 0.123124
Target:  5'- cGGuGUCCugcguauGUGGGGCGGCGGGGCCg -3'
miRNA:   3'- cCCcCGGGu------UACCCCGCCGUCCUGGg -5'
5308 3' -63.9 NC_001798.1 + 59666 0.77 0.126183
Target:  5'- gGGGGGCgacUCGGcucgcgugGGGGCGGCGGGcacGCCCg -3'
miRNA:   3'- -CCCCCG---GGUUa-------CCCCGCCGUCC---UGGG- -5'
5308 3' -63.9 NC_001798.1 + 153233 0.77 0.132514
Target:  5'- -cGGGCCCGcgGcGGCGG-AGGACCCg -3'
miRNA:   3'- ccCCCGGGUuaCcCCGCCgUCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 35421 0.77 0.132514
Target:  5'- cGGGGGCCUAAUGcGGCGGgAGGcguggGCCg -3'
miRNA:   3'- -CCCCCGGGUUACcCCGCCgUCC-----UGGg -5'
5308 3' -63.9 NC_001798.1 + 147488 0.77 0.132514
Target:  5'- cGGGGGaCCCAGgcuccGGGGgGGgGGGGCgCCu -3'
miRNA:   3'- -CCCCC-GGGUUa----CCCCgCCgUCCUG-GG- -5'
5308 3' -63.9 NC_001798.1 + 69193 0.76 0.139135
Target:  5'- uGGGGGaggUCGGUGGGGUGccGCAGGGCCa -3'
miRNA:   3'- -CCCCCg--GGUUACCCCGC--CGUCCUGGg -5'
5308 3' -63.9 NC_001798.1 + 16155 0.76 0.142559
Target:  5'- cGGGGGCaCCGAgcgccacGGGCGGCccgcgGGGACCg -3'
miRNA:   3'- -CCCCCG-GGUUac-----CCCGCCG-----UCCUGGg -5'
5308 3' -63.9 NC_001798.1 + 31983 0.76 0.145706
Target:  5'- uGGGGGCCaaga-GGGCGGCGccgcgccGGGCCCc -3'
miRNA:   3'- -CCCCCGGguuacCCCGCCGU-------CCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 64141 0.76 0.157036
Target:  5'- aGGGGGUcggugcUCGcgGGGGagaCGGCGGGAUCCa -3'
miRNA:   3'- -CCCCCG------GGUuaCCCC---GCCGUCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 102044 0.76 0.157036
Target:  5'- cGGGGGUCUccgugucugcguGggGGuGGUGGUAGGGCCCc -3'
miRNA:   3'- -CCCCCGGG------------UuaCC-CCGCCGUCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 13409 0.75 0.160857
Target:  5'- gGGGGGCCUccGAUGGGGCauGUAGGAgCa -3'
miRNA:   3'- -CCCCCGGG--UUACCCCGc-CGUCCUgGg -5'
5308 3' -63.9 NC_001798.1 + 36292 0.75 0.160857
Target:  5'- gGGGGGUgCcGUGGguguGGCGGCGGGGCgCg -3'
miRNA:   3'- -CCCCCGgGuUACC----CCGCCGUCCUGgG- -5'
5308 3' -63.9 NC_001798.1 + 126613 0.75 0.160857
Target:  5'- cGGGGGCUCGggGGGGUacGGCgAGGugCa -3'
miRNA:   3'- -CCCCCGGGUuaCCCCG--CCG-UCCugGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.