miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5308 3' -63.9 NC_001798.1 + 26852 0.66 0.590522
Target:  5'- cGGGGGUCgGGcgggcgGGGGUcgggcgGGCGGGGgUCg -3'
miRNA:   3'- -CCCCCGGgUUa-----CCCCG------CCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 26807 0.66 0.590522
Target:  5'- cGGGGGUCgGGcgggcgGGGGUcgggcgGGCGGGGgUCg -3'
miRNA:   3'- -CCCCCGGgUUa-----CCCCG------CCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 10879 0.66 0.590522
Target:  5'- --cGGCCCcgcgagccAUGuucGGGUGGCAGGAgCCg -3'
miRNA:   3'- cccCCGGGu-------UAC---CCCGCCGUCCUgGG- -5'
5308 3' -63.9 NC_001798.1 + 148416 0.66 0.580939
Target:  5'- gGGuGGGCgCCGGggcgGGGGUGgGCAcGGGCg- -3'
miRNA:   3'- -CC-CCCG-GGUUa---CCCCGC-CGU-CCUGgg -5'
5308 3' -63.9 NC_001798.1 + 23717 0.66 0.580939
Target:  5'- cGGGcGGCCCcg-GcGGGuCGaGCuGGACgCCg -3'
miRNA:   3'- -CCC-CCGGGuuaC-CCC-GC-CGuCCUG-GG- -5'
5308 3' -63.9 NC_001798.1 + 45999 0.66 0.580939
Target:  5'- gGGGGGaUCCA--GGGGagGGCGuGGGuCCCc -3'
miRNA:   3'- -CCCCC-GGGUuaCCCCg-CCGU-CCU-GGG- -5'
5308 3' -63.9 NC_001798.1 + 48535 0.66 0.580939
Target:  5'- aGGGGCggGA-GGGGCGGgAGGGgCg -3'
miRNA:   3'- cCCCCGggUUaCCCCGCCgUCCUgGg -5'
5308 3' -63.9 NC_001798.1 + 48562 0.66 0.580939
Target:  5'- aGGGGCggGA-GGGGCGGgAGGGgCg -3'
miRNA:   3'- cCCCCGggUUaCCCCGCCgUCCUgGg -5'
5308 3' -63.9 NC_001798.1 + 48589 0.66 0.580939
Target:  5'- aGGGGCggGA-GGGGCGGgAGGGgCg -3'
miRNA:   3'- cCCCCGggUUaCCCCGCCgUCCUgGg -5'
5308 3' -63.9 NC_001798.1 + 51486 0.66 0.580939
Target:  5'- -cGGGCCCGGagcUGcaGGCGGCAuucccccuGGACCg -3'
miRNA:   3'- ccCCCGGGUU---ACc-CCGCCGU--------CCUGGg -5'
5308 3' -63.9 NC_001798.1 + 100781 0.66 0.580939
Target:  5'- -uGGGagUAGUGGGG-GGCGGGugUCg -3'
miRNA:   3'- ccCCCggGUUACCCCgCCGUCCugGG- -5'
5308 3' -63.9 NC_001798.1 + 35040 0.66 0.580939
Target:  5'- cGGGGGUCCcc-GaGGCaagaGGC-GGACCCu -3'
miRNA:   3'- -CCCCCGGGuuaCcCCG----CCGuCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 34798 0.66 0.571389
Target:  5'- cGGcGcGGCCC---GGGGCccCGGGGCCCc -3'
miRNA:   3'- -CC-C-CCGGGuuaCCCCGccGUCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 38304 0.66 0.571389
Target:  5'- gGGGGGCgacGUGGGuGauGUccGGGGCCCg -3'
miRNA:   3'- -CCCCCGgguUACCC-CgcCG--UCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 130908 0.66 0.571389
Target:  5'- aGGuGGGCCagcuggcugaugCGGUGGGccaGCaGCAGGACUg -3'
miRNA:   3'- -CC-CCCGG------------GUUACCC---CGcCGUCCUGGg -5'
5308 3' -63.9 NC_001798.1 + 51333 0.66 0.571389
Target:  5'- uGGGG-CgGGUGGGcgguucGCGGguGGugCCc -3'
miRNA:   3'- cCCCCgGgUUACCC------CGCCguCCugGG- -5'
5308 3' -63.9 NC_001798.1 + 89242 0.66 0.571389
Target:  5'- cGGGGucgacgugaaaCCCGgagGUGGGGUcG-AGGACCCg -3'
miRNA:   3'- cCCCC-----------GGGU---UACCCCGcCgUCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 105383 0.66 0.570436
Target:  5'- cGGcGGCCUg--GaGGGCGGCguucuccAGGGCCg -3'
miRNA:   3'- cCC-CCGGGuuaC-CCCGCCG-------UCCUGGg -5'
5308 3' -63.9 NC_001798.1 + 27687 0.66 0.568531
Target:  5'- cGGGGGuugacucCCCGGgggaaaagaggcGGGGCGGgAGucCCCg -3'
miRNA:   3'- -CCCCC-------GGGUUa-----------CCCCGCCgUCcuGGG- -5'
5308 3' -63.9 NC_001798.1 + 6578 0.66 0.561877
Target:  5'- gGGGGGacgggCCGG-GGGGaCGGgGGGACgggCCg -3'
miRNA:   3'- -CCCCCg----GGUUaCCCC-GCCgUCCUG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.