miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5308 3' -63.9 NC_001798.1 + 57 0.72 0.2744
Target:  5'- gGGGGGCgCGAagGcGGGCGGCGGcGGCg- -3'
miRNA:   3'- -CCCCCGgGUUa-C-CCCGCCGUC-CUGgg -5'
5308 3' -63.9 NC_001798.1 + 1988 0.68 0.438693
Target:  5'- cGGGGGCgCGGUccaguugcccgcccaGGcGGCcguGGCGGG-CCCg -3'
miRNA:   3'- -CCCCCGgGUUA---------------CC-CCG---CCGUCCuGGG- -5'
5308 3' -63.9 NC_001798.1 + 2099 0.68 0.452427
Target:  5'- gGGGGGCCCGcccccGGcGCGGCccgcggccAGGuccucGCCCg -3'
miRNA:   3'- -CCCCCGGGUuac--CC-CGCCG--------UCC-----UGGG- -5'
5308 3' -63.9 NC_001798.1 + 2222 0.66 0.542988
Target:  5'- -cGGGCCCGAggcgcgcagcgGGccgaaGGCGGCGGGcGCgCCg -3'
miRNA:   3'- ccCCCGGGUUa----------CC-----CCGCCGUCC-UG-GG- -5'
5308 3' -63.9 NC_001798.1 + 2384 0.69 0.378446
Target:  5'- cGGGGCgCAGUaggccuccagGGcGGCGGCcgAGGGCgCCg -3'
miRNA:   3'- cCCCCGgGUUA----------CC-CCGCCG--UCCUG-GG- -5'
5308 3' -63.9 NC_001798.1 + 2473 0.72 0.2744
Target:  5'- cGGGGCCCucgGcGGGcCGGCGGGucaGCgCCg -3'
miRNA:   3'- cCCCCGGGuuaC-CCC-GCCGUCC---UG-GG- -5'
5308 3' -63.9 NC_001798.1 + 2543 0.68 0.452427
Target:  5'- gGGGGGCgCGGcccccgcgggaGGGGCGGCcgcGGGGCg- -3'
miRNA:   3'- -CCCCCGgGUUa----------CCCCGCCG---UCCUGgg -5'
5308 3' -63.9 NC_001798.1 + 2607 0.67 0.532688
Target:  5'- gGGGGGCgC---GGGGCgccgcccGGCGGcGCCCu -3'
miRNA:   3'- -CCCCCGgGuuaCCCCG-------CCGUCcUGGG- -5'
5308 3' -63.9 NC_001798.1 + 2964 0.69 0.398977
Target:  5'- cGGGGCgCGucggcgugcggcGGGGCGGCcGG-CCCg -3'
miRNA:   3'- cCCCCGgGUua----------CCCCGCCGuCCuGGG- -5'
5308 3' -63.9 NC_001798.1 + 3000 0.69 0.407874
Target:  5'- -cGGGCCCcgggcgcggGGGcGCGGCGGGccgggcuccggccaGCCCc -3'
miRNA:   3'- ccCCCGGGuua------CCC-CGCCGUCC--------------UGGG- -5'
5308 3' -63.9 NC_001798.1 + 3319 0.68 0.469918
Target:  5'- cGGGGCggc--GGcGGCGGCGGGcuuCCCg -3'
miRNA:   3'- cCCCCGgguuaCC-CCGCCGUCCu--GGG- -5'
5308 3' -63.9 NC_001798.1 + 3771 0.67 0.496781
Target:  5'- cGGGcGCCCAcacGGGCGcCGGGgcGCCCg -3'
miRNA:   3'- cCCC-CGGGUuacCCCGCcGUCC--UGGG- -5'
5308 3' -63.9 NC_001798.1 + 3834 0.67 0.496781
Target:  5'- cGGGcGCCCcccaGAggccGGGGCGGCugucGCCCa -3'
miRNA:   3'- cCCC-CGGG----UUa---CCCCGCCGucc-UGGG- -5'
5308 3' -63.9 NC_001798.1 + 3892 0.68 0.478792
Target:  5'- cGGGGGCgg---GGGGcCGGCcccGGGCCa -3'
miRNA:   3'- -CCCCCGgguuaCCCC-GCCGu--CCUGGg -5'
5308 3' -63.9 NC_001798.1 + 4088 0.79 0.086966
Target:  5'- cGGGGGUCCGGgccGGGGCGGgCucGGCCCu -3'
miRNA:   3'- -CCCCCGGGUUa--CCCCGCC-GucCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 4119 0.71 0.286837
Target:  5'- gGGcGGGCUCGGccGGGGCGccgccccCGGGGCCCu -3'
miRNA:   3'- -CC-CCCGGGUUa-CCCCGCc------GUCCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 4367 0.67 0.491351
Target:  5'- gGGGGGCgCGccggcggcgGUGGuGGUgguggugguggugucGGCGGGGCgCCg -3'
miRNA:   3'- -CCCCCGgGU---------UACC-CCG---------------CCGUCCUG-GG- -5'
5308 3' -63.9 NC_001798.1 + 4577 0.67 0.524314
Target:  5'- aGGGGGUCCGcgGcGGagaaGGCGagcGGGCCg -3'
miRNA:   3'- -CCCCCGGGUuaCcCCg---CCGU---CCUGGg -5'
5308 3' -63.9 NC_001798.1 + 4863 0.66 0.552408
Target:  5'- -cGGGUUCGggGuGGGCGGCGguccgucggcuGGAUCCg -3'
miRNA:   3'- ccCCCGGGUuaC-CCCGCCGU-----------CCUGGG- -5'
5308 3' -63.9 NC_001798.1 + 5249 0.66 0.552408
Target:  5'- cGGGGCgCGc-GGGGCGGgGGGAa-- -3'
miRNA:   3'- cCCCCGgGUuaCCCCGCCgUCCUggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.