miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5308 5' -50.8 NC_001798.1 + 16381 0.66 0.994849
Target:  5'- -cGGGUCGgagGCCcgCCGcccugguACGUg -3'
miRNA:   3'- caCCCAGCa--CGGuaGGCuuauu--UGCA- -5'
5308 5' -50.8 NC_001798.1 + 106024 0.66 0.993469
Target:  5'- gGUGGGgccggaugacccgcCGUGCCuUCCGggUc-ACGUg -3'
miRNA:   3'- -CACCCa-------------GCACGGuAGGCuuAuuUGCA- -5'
5308 5' -50.8 NC_001798.1 + 143317 0.66 0.993082
Target:  5'- -cGGGUCGccgGCCAcgCuCGAcGUAAGCGg -3'
miRNA:   3'- caCCCAGCa--CGGUa-G-GCU-UAUUUGCa -5'
5308 5' -50.8 NC_001798.1 + 78952 0.66 0.990859
Target:  5'- -gGGGUCGcuuugGCCGcgUCCGGggGGGCGc -3'
miRNA:   3'- caCCCAGCa----CGGU--AGGCUuaUUUGCa -5'
5308 5' -50.8 NC_001798.1 + 137340 0.67 0.989555
Target:  5'- -gGGGUCG-GCCAUCCcu----GCGUu -3'
miRNA:   3'- caCCCAGCaCGGUAGGcuuauuUGCA- -5'
5308 5' -50.8 NC_001798.1 + 96717 0.67 0.986515
Target:  5'- gGUGGGgucgggccucaUCGUGCCc-CCGGAgcUGAGCGa -3'
miRNA:   3'- -CACCC-----------AGCACGGuaGGCUU--AUUUGCa -5'
5308 5' -50.8 NC_001798.1 + 52342 0.67 0.982837
Target:  5'- -gGGGUCGUGgCggCCGAGcacgAGGCGc -3'
miRNA:   3'- caCCCAGCACgGuaGGCUUa---UUUGCa -5'
5308 5' -50.8 NC_001798.1 + 152824 0.68 0.981598
Target:  5'- -cGGGgagCGagggGCCGUCCGAacguuuuuaauuaccAUAAGCGg -3'
miRNA:   3'- caCCCa--GCa---CGGUAGGCU---------------UAUUUGCa -5'
5308 5' -50.8 NC_001798.1 + 30716 0.68 0.980736
Target:  5'- -cGGGUCGUucagcaCCAUCcCGAuaGUGAACGa -3'
miRNA:   3'- caCCCAGCAc-----GGUAG-GCU--UAUUUGCa -5'
5308 5' -50.8 NC_001798.1 + 83611 0.69 0.960365
Target:  5'- uUGGGUCGcGCCGUaagaaucgggCCGGAggcggGAGCGg -3'
miRNA:   3'- cACCCAGCaCGGUA----------GGCUUa----UUUGCa -5'
5308 5' -50.8 NC_001798.1 + 50576 0.7 0.943673
Target:  5'- gGUGGGgggugUGUGCCGUUgGGuUGGGCGUu -3'
miRNA:   3'- -CACCCa----GCACGGUAGgCUuAUUUGCA- -5'
5308 5' -50.8 NC_001798.1 + 80821 0.71 0.917138
Target:  5'- ---cGUCGUGUCGUCCGAcaugAGACGUg -3'
miRNA:   3'- caccCAGCACGGUAGGCUua--UUUGCA- -5'
5308 5' -50.8 NC_001798.1 + 91623 0.74 0.782586
Target:  5'- aUGGG-CGgccgGCCGcCCGggUGAGCGUg -3'
miRNA:   3'- cACCCaGCa---CGGUaGGCuuAUUUGCA- -5'
5308 5' -50.8 NC_001798.1 + 15984 1.09 0.009523
Target:  5'- cGUGGGUCGUGCCAUCCGAAUAAACGUg -3'
miRNA:   3'- -CACCCAGCACGGUAGGCUUAUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.