miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5309 3' -62.4 NC_001798.1 + 150468 0.66 0.657046
Target:  5'- -cGCGCGggggCGCgCggcGCGCCCCGacgaCUg -3'
miRNA:   3'- caCGCGCaua-GCG-Ga--CGCGGGGCg---GG- -5'
5309 3' -62.4 NC_001798.1 + 76706 0.66 0.657046
Target:  5'- -gGCGCGcuccCGgCUucgggagcGCGCCCaCGCCCu -3'
miRNA:   3'- caCGCGCaua-GCgGA--------CGCGGG-GCGGG- -5'
5309 3' -62.4 NC_001798.1 + 46396 0.66 0.657046
Target:  5'- -cGCGcCGUcUgGCCggcaGgGCCaCCGCCCc -3'
miRNA:   3'- caCGC-GCAuAgCGGa---CgCGG-GGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 138969 0.66 0.657046
Target:  5'- -aGCGUGcAUCGCCacgUGuCGaacaCCCGCUCg -3'
miRNA:   3'- caCGCGCaUAGCGG---AC-GCg---GGGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 145609 0.66 0.65509
Target:  5'- -cGcCGCGaccccgacccCGCCccacCGCCCCGCCCg -3'
miRNA:   3'- caC-GCGCaua-------GCGGac--GCGGGGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 152644 0.66 0.654112
Target:  5'- -gGCGCcc--CGCCgGCGCggcccugaguggugCCCGCCCc -3'
miRNA:   3'- caCGCGcauaGCGGaCGCG--------------GGGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 3522 0.66 0.653133
Target:  5'- cGUGCGCcaggccccaGCCgaaGCGgCCCGCCg -3'
miRNA:   3'- -CACGCGcauag----CGGa--CGCgGGGCGGg -5'
5309 3' -62.4 NC_001798.1 + 36979 0.66 0.64726
Target:  5'- -aGCGUG-AUUGa---CGCCCCGCCCc -3'
miRNA:   3'- caCGCGCaUAGCggacGCGGGGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 151865 0.66 0.64726
Target:  5'- -cGCGcCGUGUCcCCcGUGUCCCuCCCu -3'
miRNA:   3'- caCGC-GCAUAGcGGaCGCGGGGcGGG- -5'
5309 3' -62.4 NC_001798.1 + 29010 0.66 0.64726
Target:  5'- -cGCGCGc--CGCC-GCGCgggcccggacUCCGCCCc -3'
miRNA:   3'- caCGCGCauaGCGGaCGCG----------GGGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 125529 0.66 0.64726
Target:  5'- -cGCaGCGcAUCGCCgccgaGCGUcaggCCCGCCg -3'
miRNA:   3'- caCG-CGCaUAGCGGa----CGCG----GGGCGGg -5'
5309 3' -62.4 NC_001798.1 + 121518 0.66 0.644322
Target:  5'- -gGCGUGUacgacccguacacgGUCGCg-GCGCUgCGCCUg -3'
miRNA:   3'- caCGCGCA--------------UAGCGgaCGCGGgGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 125274 0.66 0.641382
Target:  5'- -gGCGCGcacucccgaaacCGCaggcGCGCCaCCGCCCg -3'
miRNA:   3'- caCGCGCaua---------GCGga--CGCGG-GGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 1294 0.66 0.641382
Target:  5'- -gGCGCG--UCGCCgucgggcucgagcaGCGCCCgCGCgCa -3'
miRNA:   3'- caCGCGCauAGCGGa-------------CGCGGG-GCGgG- -5'
5309 3' -62.4 NC_001798.1 + 54657 0.66 0.637463
Target:  5'- -aGCaGCGgccggcaGCCgcgGCGCgCCCGCUCg -3'
miRNA:   3'- caCG-CGCauag---CGGa--CGCG-GGGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 94949 0.66 0.637463
Target:  5'- -gGC-CGUcAUCGCC-GgGUCCCGCCg -3'
miRNA:   3'- caCGcGCA-UAGCGGaCgCGGGGCGGg -5'
5309 3' -62.4 NC_001798.1 + 142997 0.66 0.637463
Target:  5'- uUGCGCG----GCUUGCGCgaccgaauaaCCGCCCg -3'
miRNA:   3'- cACGCGCauagCGGACGCGg---------GGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 39539 0.66 0.637463
Target:  5'- -cGCGCc--UCGCCgugggugGCGCCggggCCGUCCg -3'
miRNA:   3'- caCGCGcauAGCGGa------CGCGG----GGCGGG- -5'
5309 3' -62.4 NC_001798.1 + 70065 0.66 0.637463
Target:  5'- -cGCGcCGcGUCGCCgaGCGCgCaCGCCg -3'
miRNA:   3'- caCGC-GCaUAGCGGa-CGCGgG-GCGGg -5'
5309 3' -62.4 NC_001798.1 + 52248 0.66 0.637463
Target:  5'- cGUGgGgGcg-CGCCUGCacccgcaCUCCGCCCa -3'
miRNA:   3'- -CACgCgCauaGCGGACGc------GGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.