miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5309 5' -52.3 NC_001798.1 + 76853 0.66 0.979707
Target:  5'- cUAAAGgcGUGUccgGCCGugcuGGCGACCc- -3'
miRNA:   3'- -GUUUCaaCACGa--CGGUu---CCGCUGGuc -5'
5309 5' -52.3 NC_001798.1 + 34965 0.66 0.979014
Target:  5'- cCGGAGggGgcgGCcGCCGAGGUgcgggggccccuccGGCCGGg -3'
miRNA:   3'- -GUUUCaaCa--CGaCGGUUCCG--------------CUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 152223 0.66 0.974745
Target:  5'- --cGGggGU-CUGCCGcGGCGGCCGc -3'
miRNA:   3'- guuUCaaCAcGACGGUuCCGCUGGUc -5'
5309 5' -52.3 NC_001798.1 + 2970 0.66 0.971957
Target:  5'- gCGucGgcGUGC-GgCGGGGCGGCCGGc -3'
miRNA:   3'- -GUuuCaaCACGaCgGUUCCGCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 36484 0.66 0.968954
Target:  5'- gGGAGggG-GC-GCCGgcgcgacgcGGGCGGCCGGg -3'
miRNA:   3'- gUUUCaaCaCGaCGGU---------UCCGCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 125861 0.66 0.968954
Target:  5'- ---uGUUGgcgccuuuaugGCcGCCAAGGCGGCCc- -3'
miRNA:   3'- guuuCAACa----------CGaCGGUUCCGCUGGuc -5'
5309 5' -52.3 NC_001798.1 + 43266 0.67 0.965728
Target:  5'- cCGGGGgcgucgUGcccUGCUGCUccguGGCGGCCAGc -3'
miRNA:   3'- -GUUUCa-----AC---ACGACGGuu--CCGCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 96785 0.67 0.962273
Target:  5'- aGGAGcUGUGC-GUCAccgcgaacaagGGGCGACCAu -3'
miRNA:   3'- gUUUCaACACGaCGGU-----------UCCGCUGGUc -5'
5309 5' -52.3 NC_001798.1 + 122423 0.67 0.962273
Target:  5'- aCGGAGgccUGUGCcGCCGAGcGCGucgugcgcccccACCAGc -3'
miRNA:   3'- -GUUUCa--ACACGaCGGUUC-CGC------------UGGUC- -5'
5309 5' -52.3 NC_001798.1 + 113479 0.67 0.962273
Target:  5'- gGGGGUUGUGCgUGaUCAuGGGCGGCgCGGc -3'
miRNA:   3'- gUUUCAACACG-AC-GGU-UCCGCUG-GUC- -5'
5309 5' -52.3 NC_001798.1 + 30761 0.67 0.958584
Target:  5'- ------cGUGgagGCCGAGGCGGCCGu -3'
miRNA:   3'- guuucaaCACga-CGGUUCCGCUGGUc -5'
5309 5' -52.3 NC_001798.1 + 111898 0.67 0.954655
Target:  5'- cCGGGGgagGUGCgccuggGCCAGGGCGAauaCGu -3'
miRNA:   3'- -GUUUCaa-CACGa-----CGGUUCCGCUg--GUc -5'
5309 5' -52.3 NC_001798.1 + 99370 0.67 0.95048
Target:  5'- -uGAGuUUGUGCUGgCGacGGGCGACUu- -3'
miRNA:   3'- guUUC-AACACGACgGU--UCCGCUGGuc -5'
5309 5' -52.3 NC_001798.1 + 72752 0.68 0.941381
Target:  5'- uCAAAGUUGa--UGUCGGGG-GACCAGg -3'
miRNA:   3'- -GUUUCAACacgACGGUUCCgCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 130411 0.69 0.91416
Target:  5'- gCAAAGgcG-GCgacgagcGCCAGGGCGACgCGGa -3'
miRNA:   3'- -GUUUCaaCaCGa------CGGUUCCGCUG-GUC- -5'
5309 5' -52.3 NC_001798.1 + 19288 0.69 0.907945
Target:  5'- ---cGUgGUGgUGCCc-GGCGACCGGg -3'
miRNA:   3'- guuuCAaCACgACGGuuCCGCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 122805 0.7 0.857547
Target:  5'- ------cGUGCUGgCGcaucuGGGCGGCCAGg -3'
miRNA:   3'- guuucaaCACGACgGU-----UCCGCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 53437 0.73 0.717366
Target:  5'- gCGAGGUggaGCUGUC-GGGCGGCCAGc -3'
miRNA:   3'- -GUUUCAacaCGACGGuUCCGCUGGUC- -5'
5309 5' -52.3 NC_001798.1 + 61679 0.73 0.696593
Target:  5'- --cGGUUGUGUucgggGCCAAGGCGAUCc- -3'
miRNA:   3'- guuUCAACACGa----CGGUUCCGCUGGuc -5'
5309 5' -52.3 NC_001798.1 + 14831 1.09 0.005216
Target:  5'- cCAAAGUUGUGCUGCCAAGGCGACCAGa -3'
miRNA:   3'- -GUUUCAACACGACGGUUCCGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.