miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5310 3' -52.4 NC_001798.1 + 40944 0.66 0.98327
Target:  5'- uGAuCGCGCaggcgCCCCGGGAg-AUGAGAg -3'
miRNA:   3'- -CU-GUGCGgua--GGGGUCUUagUACUCU- -5'
5310 3' -52.4 NC_001798.1 + 4733 0.66 0.981221
Target:  5'- cGACG-GCC-UCCCCGGAcgCcgGGGc -3'
miRNA:   3'- -CUGUgCGGuAGGGGUCUuaGuaCUCu -5'
5310 3' -52.4 NC_001798.1 + 108677 0.66 0.97899
Target:  5'- aACGCGCCGcCCCCGGGGcCGcccgcgGGGAc -3'
miRNA:   3'- cUGUGCGGUaGGGGUCUUaGUa-----CUCU- -5'
5310 3' -52.4 NC_001798.1 + 9900 0.66 0.97899
Target:  5'- -cCACGCCAaCCCCGGGAccgguucCAUGcGAg -3'
miRNA:   3'- cuGUGCGGUaGGGGUCUUa------GUACuCU- -5'
5310 3' -52.4 NC_001798.1 + 15428 0.66 0.97899
Target:  5'- gGGguUGUUuggggCCCCGGAGUCGUGGGGc -3'
miRNA:   3'- -CUguGCGGua---GGGGUCUUAGUACUCU- -5'
5310 3' -52.4 NC_001798.1 + 52317 0.66 0.971412
Target:  5'- -uCGCGCCcugccccugggcagCCCCGGggUCGUGGc- -3'
miRNA:   3'- cuGUGCGGua------------GGGGUCuuAGUACUcu -5'
5310 3' -52.4 NC_001798.1 + 29102 0.66 0.97112
Target:  5'- cGGC-CGCCAUCCCCGcg--CAUGGu- -3'
miRNA:   3'- -CUGuGCGGUAGGGGUcuuaGUACUcu -5'
5310 3' -52.4 NC_001798.1 + 35355 0.67 0.96808
Target:  5'- uGGCGCGCCcccCCCCAa---CGUGGGAg -3'
miRNA:   3'- -CUGUGCGGua-GGGGUcuuaGUACUCU- -5'
5310 3' -52.4 NC_001798.1 + 148498 0.67 0.96133
Target:  5'- -cCAC-CCGUCCCCGGGggCA-GAGGg -3'
miRNA:   3'- cuGUGcGGUAGGGGUCUuaGUaCUCU- -5'
5310 3' -52.4 NC_001798.1 + 57080 0.67 0.96133
Target:  5'- uACAUGCCcuggGUCUCCAGggUCAgcucuucgaugaUGAGc -3'
miRNA:   3'- cUGUGCGG----UAGGGGUCuuAGU------------ACUCu -5'
5310 3' -52.4 NC_001798.1 + 12565 0.67 0.953651
Target:  5'- gGGCGCGUCGUCauCCCGGAu--GUGGGGg -3'
miRNA:   3'- -CUGUGCGGUAG--GGGUCUuagUACUCU- -5'
5310 3' -52.4 NC_001798.1 + 127680 0.68 0.949451
Target:  5'- cGCGCGCCAcUCUCU---GUCGUGAGGa -3'
miRNA:   3'- cUGUGCGGU-AGGGGucuUAGUACUCU- -5'
5310 3' -52.4 NC_001798.1 + 133186 0.68 0.935364
Target:  5'- --gGCGUCAUCCCCAcGAUCAacgccgccgGAGAg -3'
miRNA:   3'- cugUGCGGUAGGGGUcUUAGUa--------CUCU- -5'
5310 3' -52.4 NC_001798.1 + 142311 0.68 0.930166
Target:  5'- gGACGCGCUAguaCCCAGAGgcuggagcgcUgGUGGGAc -3'
miRNA:   3'- -CUGUGCGGUag-GGGUCUU----------AgUACUCU- -5'
5310 3' -52.4 NC_001798.1 + 87984 0.68 0.930166
Target:  5'- gGACGCGCC-UCCCgGGGGgucggCAUGcGAc -3'
miRNA:   3'- -CUGUGCGGuAGGGgUCUUa----GUACuCU- -5'
5310 3' -52.4 NC_001798.1 + 40346 0.68 0.930166
Target:  5'- ---cCGCCGUCCCCAGAaaccaAUCGgacaccGAGGg -3'
miRNA:   3'- cuguGCGGUAGGGGUCU-----UAGUa-----CUCU- -5'
5310 3' -52.4 NC_001798.1 + 38482 0.7 0.879543
Target:  5'- cGCACGCCGgcaucgCCCCGGAGUCu----- -3'
miRNA:   3'- cUGUGCGGUa-----GGGGUCUUAGuacucu -5'
5310 3' -52.4 NC_001798.1 + 67977 0.7 0.872124
Target:  5'- gGAUAUGCCuAUCUCCuGAGUCAgGGGGg -3'
miRNA:   3'- -CUGUGCGG-UAGGGGuCUUAGUaCUCU- -5'
5310 3' -52.4 NC_001798.1 + 61828 0.73 0.757601
Target:  5'- gGGCACGCCuucgCCCCGGGGgaCcgGGGAa -3'
miRNA:   3'- -CUGUGCGGua--GGGGUCUUa-GuaCUCU- -5'
5310 3' -52.4 NC_001798.1 + 37530 0.77 0.529784
Target:  5'- cGACACGCCccaagCCCCAGggUgGUGuGGc -3'
miRNA:   3'- -CUGUGCGGua---GGGGUCuuAgUACuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.