miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5310 5' -56.8 NC_001798.1 + 89196 0.66 0.894041
Target:  5'- -gCCugGAUGAugcuGGGGuacaGGCuGGCAAAGUc -3'
miRNA:   3'- ggGGugCUACU----CCCC----CUG-CCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 96971 0.66 0.894041
Target:  5'- gCUgGCGcgGAccGcGGcGGGCGGCGGGGCc -3'
miRNA:   3'- gGGgUGCuaCU--C-CC-CCUGCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 130518 0.66 0.894041
Target:  5'- gCCgACGAUGccGGuGGCGGCGAuGGCc -3'
miRNA:   3'- gGGgUGCUACucCCcCUGCCGUU-UCG- -5'
5310 5' -56.8 NC_001798.1 + 47213 0.66 0.89339
Target:  5'- gCCCGCccuguUGGGaaGGGGugGGCGugucguuGGGCg -3'
miRNA:   3'- gGGGUGcu---ACUC--CCCCugCCGU-------UUCG- -5'
5310 5' -56.8 NC_001798.1 + 49249 0.66 0.892736
Target:  5'- gCCCAgCGAcgUGAucgacugGGGGGAUGcGCAcguccccGAGCg -3'
miRNA:   3'- gGGGU-GCU--ACU-------CCCCCUGC-CGU-------UUCG- -5'
5310 5' -56.8 NC_001798.1 + 2588 0.66 0.887431
Target:  5'- gUCCGCGcgGcucuucuucGGGGGGC-GCGGGGCg -3'
miRNA:   3'- gGGGUGCuaCu--------CCCCCUGcCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 90072 0.66 0.887431
Target:  5'- aCUCCAgGAcGAcGGGGGcCGGCAg--- -3'
miRNA:   3'- -GGGGUgCUaCU-CCCCCuGCCGUuucg -5'
5310 5' -56.8 NC_001798.1 + 113978 0.66 0.887431
Target:  5'- gCCgGCGGUGAGGcguugugcGGGAgGgGCuuGGCc -3'
miRNA:   3'- gGGgUGCUACUCC--------CCCUgC-CGuuUCG- -5'
5310 5' -56.8 NC_001798.1 + 151680 0.66 0.887431
Target:  5'- gCCCGCcucgGAGGuGGGucGCGGUGAAGg -3'
miRNA:   3'- gGGGUGcua-CUCC-CCC--UGCCGUUUCg -5'
5310 5' -56.8 NC_001798.1 + 51843 0.66 0.887431
Target:  5'- gCCUGCacacgGAGGGGcGCGGCucGGAGCu -3'
miRNA:   3'- gGGGUGcua--CUCCCCcUGCCG--UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 79223 0.66 0.886757
Target:  5'- gCCCugGGagaUGAacuuugacgcccuGGGGGGCcugcuGGCGGAGUu -3'
miRNA:   3'- gGGGugCU---ACU-------------CCCCCUG-----CCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 2379 0.66 0.885405
Target:  5'- gCCCGCGggGcgcaguaggccuccAGGGcGGCGGCcgAGGGCg -3'
miRNA:   3'- gGGGUGCuaC--------------UCCCcCUGCCG--UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 57595 0.66 0.885405
Target:  5'- cCCCCGCGGgcccaccguuaucgUGcguccGGGGGA-GGCAuuGGCc -3'
miRNA:   3'- -GGGGUGCU--------------ACu----CCCCCUgCCGUu-UCG- -5'
5310 5' -56.8 NC_001798.1 + 59543 0.66 0.880603
Target:  5'- aCCCCggaagGCGGaGAGGGGGcuGgGGCuc-GCg -3'
miRNA:   3'- -GGGG-----UGCUaCUCCCCC--UgCCGuuuCG- -5'
5310 5' -56.8 NC_001798.1 + 124307 0.66 0.880603
Target:  5'- gCCCACcugcacGAGGucgucgugggccGGGACGGCGcggaAAGCg -3'
miRNA:   3'- gGGGUGcua---CUCC------------CCCUGCCGU----UUCG- -5'
5310 5' -56.8 NC_001798.1 + 117698 0.66 0.880603
Target:  5'- --aCGCGGgggacaagGAGGGGGACGuCAuAGCc -3'
miRNA:   3'- gggGUGCUa-------CUCCCCCUGCcGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 101962 0.66 0.880603
Target:  5'- gCCCCG-GAUagaggaggccccGGGGGGGcgauguGCGGCGGcGGCa -3'
miRNA:   3'- -GGGGUgCUA------------CUCCCCC------UGCCGUU-UCG- -5'
5310 5' -56.8 NC_001798.1 + 34147 0.66 0.880603
Target:  5'- cCCCCgggaacgacgACGggGGGGGGGGaaacggGGguGGGUg -3'
miRNA:   3'- -GGGG----------UGCuaCUCCCCCUg-----CCguUUCG- -5'
5310 5' -56.8 NC_001798.1 + 24638 0.66 0.880603
Target:  5'- gCgCugGcgGAGGGcuucGACGGCGAccuGGCg -3'
miRNA:   3'- gGgGugCuaCUCCCc---CUGCCGUU---UCG- -5'
5310 5' -56.8 NC_001798.1 + 12577 0.66 0.878513
Target:  5'- aUCCCG-GAUGuGGGGGAgacguaGGCGcuugggggccaucuGAGCg -3'
miRNA:   3'- -GGGGUgCUACuCCCCCUg-----CCGU--------------UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.