miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 3' -50.2 NC_001798.1 + 117667 0.66 0.996568
Target:  5'- ---aACCCGcggGGACGCGcgGCCGgCGGc -3'
miRNA:   3'- cgcaUGGGU---UUUGCGUuaUGGCgGCU- -5'
5311 3' -50.2 NC_001798.1 + 26219 0.66 0.996568
Target:  5'- cGCGggcgACgCCAugGCGCccgGCgCGCCGGa -3'
miRNA:   3'- -CGCa---UG-GGUuuUGCGuuaUG-GCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 75355 0.66 0.996568
Target:  5'- cCGUACCCG--GCGCAcccgggGCUGuuGGa -3'
miRNA:   3'- cGCAUGGGUuuUGCGUua----UGGCggCU- -5'
5311 3' -50.2 NC_001798.1 + 145429 0.66 0.996568
Target:  5'- cGCGcGCCCc---CGCccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGuuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 145471 0.66 0.996568
Target:  5'- cGCGcGCCCc---CGCccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGuuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 145513 0.66 0.996568
Target:  5'- cGCGcGCCCc---CGCccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGuuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 154171 0.66 0.996568
Target:  5'- gGCGUagGCCCGGAGC-CGGaGCgCGUCGGg -3'
miRNA:   3'- -CGCA--UGGGUUUUGcGUUaUG-GCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 83865 0.66 0.995969
Target:  5'- gGCGgGCCCGAGGCGgCG--ACCcCCGGc -3'
miRNA:   3'- -CGCaUGGGUUUUGC-GUuaUGGcGGCU- -5'
5311 3' -50.2 NC_001798.1 + 88748 0.66 0.995969
Target:  5'- aCGgACCgGGGGCGCGcAUGCCgGCCGc -3'
miRNA:   3'- cGCaUGGgUUUUGCGU-UAUGG-CGGCu -5'
5311 3' -50.2 NC_001798.1 + 132630 0.66 0.995969
Target:  5'- -aGUuuuCCCAGguGACGaaccuguuGUGCCGCCGGu -3'
miRNA:   3'- cgCAu--GGGUU--UUGCgu------UAUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 102652 0.66 0.995969
Target:  5'- gGCGgaggGgCCGGGGCGCccGAUGCCGaaaCGGg -3'
miRNA:   3'- -CGCa---UgGGUUUUGCG--UUAUGGCg--GCU- -5'
5311 3' -50.2 NC_001798.1 + 125276 0.66 0.995969
Target:  5'- cGCGcacuCCCGAAAcCGCAGgcgcgccACCGCCc- -3'
miRNA:   3'- -CGCau--GGGUUUU-GCGUUa------UGGCGGcu -5'
5311 3' -50.2 NC_001798.1 + 2372 0.66 0.995774
Target:  5'- gGCcacgGCCCGcgGGGCGCAGUaggccuccagggcgGCgGCCGAg -3'
miRNA:   3'- -CGca--UGGGU--UUUGCGUUA--------------UGgCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 122092 0.66 0.995571
Target:  5'- gGCGgGCCUggagccgcccggcggGGGGCGCuuUGCCaGCCGGg -3'
miRNA:   3'- -CGCaUGGG---------------UUUUGCGuuAUGG-CGGCU- -5'
5311 3' -50.2 NC_001798.1 + 97584 0.66 0.995288
Target:  5'- cGCGgcCCCGAGccagggGCGCAGggGCCGgaGAg -3'
miRNA:   3'- -CGCauGGGUUU------UGCGUUa-UGGCggCU- -5'
5311 3' -50.2 NC_001798.1 + 133987 0.66 0.995288
Target:  5'- aGCGccauUACCCuauACGCGGUAUgGCUGc -3'
miRNA:   3'- -CGC----AUGGGuuuUGCGUUAUGgCGGCu -5'
5311 3' -50.2 NC_001798.1 + 143813 0.66 0.995288
Target:  5'- ---gGCCCGGgcGGCGCGcgGCCaGCCGu -3'
miRNA:   3'- cgcaUGGGUU--UUGCGUuaUGG-CGGCu -5'
5311 3' -50.2 NC_001798.1 + 31580 0.66 0.995288
Target:  5'- cGCGcGCCCc---CGCGcgGCCGUCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGUuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 104666 0.66 0.995288
Target:  5'- cCGUGCUCGua--GCG--GCCGCCGGc -3'
miRNA:   3'- cGCAUGGGUuuugCGUuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 82309 0.66 0.995288
Target:  5'- uCGUGCCCgGAGGCcCGGUugcCCGCCGc -3'
miRNA:   3'- cGCAUGGG-UUUUGcGUUAu--GGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.