miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 5' -62.8 NC_001798.1 + 6225 0.66 0.602019
Target:  5'- -cCCGGGGg---GCCGGCCGGggggaCGgGCg -3'
miRNA:   3'- gcGGUCCCaugaCGGCCGGUC-----GCgCG- -5'
5311 5' -62.8 NC_001798.1 + 113463 0.66 0.601043
Target:  5'- uCGCCacccguguuuugGGGGUugUGCgugaucaUGGgCGGCGCGg -3'
miRNA:   3'- -GCGG------------UCCCAugACG-------GCCgGUCGCGCg -5'
5311 5' -62.8 NC_001798.1 + 1288 0.66 0.596169
Target:  5'- aGCgGGGGcGCgucGCCGucgggcucgagcagcGCCcGCGCGCa -3'
miRNA:   3'- gCGgUCCCaUGa--CGGC---------------CGGuCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 100853 0.66 0.592274
Target:  5'- uGCCguGGGGcUGCUGgucCUGGCCGGCcugguCGCg -3'
miRNA:   3'- gCGG--UCCC-AUGAC---GGCCGGUCGc----GCG- -5'
5311 5' -62.8 NC_001798.1 + 27980 0.66 0.592274
Target:  5'- gCGCCccGGcGCuccagccgUGCCGcGCCccGGCGCGCu -3'
miRNA:   3'- -GCGGucCCaUG--------ACGGC-CGG--UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 36298 0.66 0.592274
Target:  5'- uGCCGuGGGUG-UGgCGGCgGG-GCGCg -3'
miRNA:   3'- gCGGU-CCCAUgACgGCCGgUCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 56509 0.66 0.592274
Target:  5'- cCGgCAGGGUGgaGCgGaucguggcgguGCCGGgGCGCc -3'
miRNA:   3'- -GCgGUCCCAUgaCGgC-----------CGGUCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 94270 0.66 0.592274
Target:  5'- uGCCacGGGGUGUUcGCCGGgCAGUcggucgagggGCGCa -3'
miRNA:   3'- gCGG--UCCCAUGA-CGGCCgGUCG----------CGCG- -5'
5311 5' -62.8 NC_001798.1 + 119882 0.66 0.592274
Target:  5'- gGCCGGGGggaucCCGGUCGGgGcCGCc -3'
miRNA:   3'- gCGGUCCCaugacGGCCGGUCgC-GCG- -5'
5311 5' -62.8 NC_001798.1 + 44855 0.66 0.592274
Target:  5'- gGUgGGGG-AaaGCCGGCgCAgagccGCGCGCg -3'
miRNA:   3'- gCGgUCCCaUgaCGGCCG-GU-----CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 75263 0.66 0.592274
Target:  5'- cCGCCAcGGcg--GuCCGGCUcgcGGCGCGCg -3'
miRNA:   3'- -GCGGUcCCaugaC-GGCCGG---UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 47667 0.66 0.592274
Target:  5'- cCGCCGcGGc---GCUGGCCcgauGCGCGCg -3'
miRNA:   3'- -GCGGUcCCaugaCGGCCGGu---CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 138771 0.66 0.591301
Target:  5'- uGCCGGGGcagcgugUGCUGCCugagaaacGCCcccaGGCGCuGCg -3'
miRNA:   3'- gCGGUCCC-------AUGACGGc-------CGG----UCGCG-CG- -5'
5311 5' -62.8 NC_001798.1 + 35543 0.66 0.589355
Target:  5'- gGCgCGGGGcgUUGCCGGCCcggcccggccccggAGCcCGCg -3'
miRNA:   3'- gCG-GUCCCauGACGGCCGG--------------UCGcGCG- -5'
5311 5' -62.8 NC_001798.1 + 27570 0.66 0.585468
Target:  5'- cCGCgGGGGaGCgGCCGGCUccgggggAgggacggggaaggggGCGCGCg -3'
miRNA:   3'- -GCGgUCCCaUGaCGGCCGG-------U---------------CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 17125 0.66 0.582555
Target:  5'- cCGCgAGcGGUAgUGCgCGGUgAG-GCGCg -3'
miRNA:   3'- -GCGgUC-CCAUgACG-GCCGgUCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 76590 0.66 0.582555
Target:  5'- gCGCCguacgucgacGGGGgcggGCUGUCccccgaGGCCA-CGCGCa -3'
miRNA:   3'- -GCGG----------UCCCa---UGACGG------CCGGUcGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 71086 0.66 0.582555
Target:  5'- gCGUCAGcccGCgGUCGGCguGCGCGCc -3'
miRNA:   3'- -GCGGUCccaUGaCGGCCGguCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 99755 0.66 0.579646
Target:  5'- gGCCGGGaUGCccGCgaGGCCAucgaccgcauguuuGCGCGCa -3'
miRNA:   3'- gCGGUCCcAUGa-CGg-CCGGU--------------CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 44906 0.67 0.57287
Target:  5'- uGCUcGGGUGCUGUgCGGUUGGggaaCGCGCc -3'
miRNA:   3'- gCGGuCCCAUGACG-GCCGGUC----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.