miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 107233 0.66 0.919302
Target:  5'- cGCGCCc--GGCAcgaACCugGUCCUgGg -3'
miRNA:   3'- -CGCGGccuUCGUug-UGGugCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 4414 0.66 0.919302
Target:  5'- gGCGCCGGGggucgcGGCGACaggcugGCCAUgggGUCCg-- -3'
miRNA:   3'- -CGCGGCCU------UCGUUG------UGGUG---CAGGagc -5'
5312 3' -56 NC_001798.1 + 8734 0.66 0.919302
Target:  5'- uGCGCacgaGGAAGUcguuGGCgGCCuCGUCUUCGc -3'
miRNA:   3'- -CGCGg---CCUUCG----UUG-UGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 146603 0.66 0.919302
Target:  5'- gGCGCC---AGCGGC-CCACG-CCUCc -3'
miRNA:   3'- -CGCGGccuUCGUUGuGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 149999 0.67 0.881596
Target:  5'- aCGCCGGGgcgAGCGGCccgugGCCGCGgucgCC-CGa -3'
miRNA:   3'- cGCGGCCU---UCGUUG-----UGGUGCa---GGaGC- -5'
5312 3' -56 NC_001798.1 + 45069 0.67 0.881596
Target:  5'- uCGCUGGA--CGACACC-CGgcgCCUCGu -3'
miRNA:   3'- cGCGGCCUucGUUGUGGuGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 31688 0.67 0.881596
Target:  5'- cGUGCCGGuGGacgcGCACCGCGcgCCcCGg -3'
miRNA:   3'- -CGCGGCCuUCgu--UGUGGUGCa-GGaGC- -5'
5312 3' -56 NC_001798.1 + 3785 0.67 0.881596
Target:  5'- gGCGCCGGG----GCGCC-CGaggCCUCGa -3'
miRNA:   3'- -CGCGGCCUucguUGUGGuGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 3259 0.67 0.881596
Target:  5'- gGCGCCGu-AGCcggcgGGCACCGCG-CgCUCGu -3'
miRNA:   3'- -CGCGGCcuUCG-----UUGUGGUGCaG-GAGC- -5'
5312 3' -56 NC_001798.1 + 19301 0.67 0.881596
Target:  5'- gGCGaCCGGGAacGCAGCugucuucgcugGCUACGgucCCUCGu -3'
miRNA:   3'- -CGC-GGCCUU--CGUUG-----------UGGUGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 67390 0.67 0.880899
Target:  5'- aGCGCCcucGAGGuCAcgcaaaugaccgcGCGCCACGUCUccgUCGa -3'
miRNA:   3'- -CGCGGc--CUUC-GU-------------UGUGGUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 71848 0.67 0.881596
Target:  5'- cCGUCGGgcGCcuaGCCACGcccCCUCGg -3'
miRNA:   3'- cGCGGCCuuCGuugUGGUGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 114229 0.67 0.88777
Target:  5'- cUGCUGGGGuccuacuGCAACACCcUGUCgCUCGu -3'
miRNA:   3'- cGCGGCCUU-------CGUUGUGGuGCAG-GAGC- -5'
5312 3' -56 NC_001798.1 + 134980 0.67 0.88777
Target:  5'- cGUGCCuGGggGCcuggcccgcggugGGCGCCAggguCGUCCUg- -3'
miRNA:   3'- -CGCGG-CCuuCG-------------UUGUGGU----GCAGGAgc -5'
5312 3' -56 NC_001798.1 + 50100 0.67 0.888445
Target:  5'- -gGCCGGGcuGGUGGCGCCGCGcaugucguUUCUCu -3'
miRNA:   3'- cgCGGCCU--UCGUUGUGGUGC--------AGGAGc -5'
5312 3' -56 NC_001798.1 + 9167 0.67 0.894419
Target:  5'- cGCGCCGGGgggcagggucucuGGCGGguCCccgcguGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU-------------UCGUUguGG------UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 1890 0.67 0.895072
Target:  5'- gGCGCCGGccAGCAGCcccaggaacuCCACGgcgCCggCGa -3'
miRNA:   3'- -CGCGGCCu-UCGUUGu---------GGUGCa--GGa-GC- -5'
5312 3' -56 NC_001798.1 + 16999 0.67 0.895072
Target:  5'- gGCGCUuGGgcGgAGCGCCGCGUCa--- -3'
miRNA:   3'- -CGCGG-CCuuCgUUGUGGUGCAGgagc -5'
5312 3' -56 NC_001798.1 + 80719 0.67 0.895072
Target:  5'- gGCGCUcc--GCAACACCACGgCCUUc -3'
miRNA:   3'- -CGCGGccuuCGUUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 139066 0.67 0.874531
Target:  5'- -gGCCGcGGgccaccacguGGCGGCGCCA-GUCCUCc -3'
miRNA:   3'- cgCGGC-CU----------UCGUUGUGGUgCAGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.