miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 68238 0.68 0.844197
Target:  5'- cCGCCGcgcGCcACACCACGcCCUCc -3'
miRNA:   3'- cGCGGCcuuCGuUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 43515 0.68 0.844197
Target:  5'- cGCGCaGGuAGGCGGCgGCCGCGUCUc-- -3'
miRNA:   3'- -CGCGgCC-UUCGUUG-UGGUGCAGGagc -5'
5312 3' -56 NC_001798.1 + 152218 0.68 0.844197
Target:  5'- cGUGCCGGggGUcu-GCCGCGgcggCCgcUCGg -3'
miRNA:   3'- -CGCGGCCuuCGuugUGGUGCa---GG--AGC- -5'
5312 3' -56 NC_001798.1 + 57618 0.68 0.844197
Target:  5'- uGCGuCCGGggGaggcauuggcCAGCACCACGaCCa-- -3'
miRNA:   3'- -CGC-GGCCuuC----------GUUGUGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 39678 0.68 0.844197
Target:  5'- gGCcCCGGcGGCGACcucGCCGCccgCCUCGg -3'
miRNA:   3'- -CGcGGCCuUCGUUG---UGGUGca-GGAGC- -5'
5312 3' -56 NC_001798.1 + 23573 0.68 0.844197
Target:  5'- gGCcCCGGggGCGGCGCCcCGgCCg-- -3'
miRNA:   3'- -CGcGGCCuuCGUUGUGGuGCaGGagc -5'
5312 3' -56 NC_001798.1 + 15111 0.68 0.844197
Target:  5'- -gGCCGGuGGC-GCugUcguCGUCCUCGg -3'
miRNA:   3'- cgCGGCCuUCGuUGugGu--GCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 133754 0.68 0.85208
Target:  5'- cGCGCCcgcguGGggGCGcugcuugcGCACgCACG-CCUCc -3'
miRNA:   3'- -CGCGG-----CCuuCGU--------UGUG-GUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 1479 0.68 0.85208
Target:  5'- cGCGCCGGGcgccauGGCGucGC-CCGCGcCCgaggCGg -3'
miRNA:   3'- -CGCGGCCU------UCGU--UGuGGUGCaGGa---GC- -5'
5312 3' -56 NC_001798.1 + 150195 0.68 0.836126
Target:  5'- gGCGUgGGggGCGGCACCGgGgguguuggugCCgCGg -3'
miRNA:   3'- -CGCGgCCuuCGUUGUGGUgCa---------GGaGC- -5'
5312 3' -56 NC_001798.1 + 95690 0.68 0.859767
Target:  5'- gGCGgCGGggGCGGC-CgGCGUCgCcCGa -3'
miRNA:   3'- -CGCgGCCuuCGUUGuGgUGCAG-GaGC- -5'
5312 3' -56 NC_001798.1 + 65369 0.68 0.859767
Target:  5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3'
miRNA:   3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 43611 0.68 0.859767
Target:  5'- cGUGCCGGAAGaacuguucCACCGCcUCC-CGa -3'
miRNA:   3'- -CGCGGCCUUCguu-----GUGGUGcAGGaGC- -5'
5312 3' -56 NC_001798.1 + 41873 0.68 0.859767
Target:  5'- cGCgGCCGGGgaucagcugcAGCAGgACCcaguCGUCCUUa -3'
miRNA:   3'- -CG-CGGCCU----------UCGUUgUGGu---GCAGGAGc -5'
5312 3' -56 NC_001798.1 + 40816 0.68 0.859767
Target:  5'- aGCGCCcccuGGggGCcGCugguuCCGCGUUUUUGg -3'
miRNA:   3'- -CGCGG----CCuuCGuUGu----GGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 17977 0.68 0.859767
Target:  5'- aCGUCGGggGgGGCugCGCGgCC-CGg -3'
miRNA:   3'- cGCGGCCuuCgUUGugGUGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 16140 0.68 0.859767
Target:  5'- gGCGgaauaccauaCCGGggGCAccgaGCGCCACGggcggCCcgCGg -3'
miRNA:   3'- -CGC----------GGCCuuCGU----UGUGGUGCa----GGa-GC- -5'
5312 3' -56 NC_001798.1 + 976 0.68 0.859767
Target:  5'- cGCGCgCGGc--CAuCGCCGCGUCUUCu -3'
miRNA:   3'- -CGCG-GCCuucGUuGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 115474 0.68 0.85208
Target:  5'- cCGUCGGggGCGugaACCACGaCCccgUCGa -3'
miRNA:   3'- cGCGGCCuuCGUug-UGGUGCaGG---AGC- -5'
5312 3' -56 NC_001798.1 + 52979 0.68 0.85208
Target:  5'- cGCGaCCGGGcugGGCGGCccGCCACGcCCa-- -3'
miRNA:   3'- -CGC-GGCCU---UCGUUG--UGGUGCaGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.