miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 43611 0.68 0.859767
Target:  5'- cGUGCCGGAAGaacuguucCACCGCcUCC-CGa -3'
miRNA:   3'- -CGCGGCCUUCguu-----GUGGUGcAGGaGC- -5'
5312 3' -56 NC_001798.1 + 65369 0.68 0.859767
Target:  5'- uGCGCaCGauGGCGuACGCCAgGUCCUgGa -3'
miRNA:   3'- -CGCG-GCcuUCGU-UGUGGUgCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 95690 0.68 0.859767
Target:  5'- gGCGgCGGggGCGGC-CgGCGUCgCcCGa -3'
miRNA:   3'- -CGCgGCCuuCGUUGuGgUGCAG-GaGC- -5'
5312 3' -56 NC_001798.1 + 137918 0.68 0.859767
Target:  5'- cCGCCGG--GCGGC-CCGCG-CCUCc -3'
miRNA:   3'- cGCGGCCuuCGUUGuGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 976 0.68 0.859767
Target:  5'- cGCGCgCGGc--CAuCGCCGCGUCUUCu -3'
miRNA:   3'- -CGCG-GCCuucGUuGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 115474 0.68 0.85208
Target:  5'- cCGUCGGggGCGugaACCACGaCCccgUCGa -3'
miRNA:   3'- cGCGGCCuuCGUug-UGGUGCaGG---AGC- -5'
5312 3' -56 NC_001798.1 + 68238 0.68 0.844197
Target:  5'- cCGCCGcgcGCcACACCACGcCCUCc -3'
miRNA:   3'- cGCGGCcuuCGuUGUGGUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 84008 0.68 0.844197
Target:  5'- cCGCCGcguGCGA-ACgGCGUCCUCGg -3'
miRNA:   3'- cGCGGCcuuCGUUgUGgUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 39863 0.68 0.8513
Target:  5'- gGCGUCGaggcuucGggGguGC-CgGCGUCCUCGg -3'
miRNA:   3'- -CGCGGC-------CuuCguUGuGgUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 24576 0.68 0.85208
Target:  5'- gGCGCgCGGAGGCGG-GCCGCGUggCCg-- -3'
miRNA:   3'- -CGCG-GCCUUCGUUgUGGUGCA--GGagc -5'
5312 3' -56 NC_001798.1 + 104460 0.68 0.85208
Target:  5'- uCGCCcGcAGCAGCGUCugGUCCUCc -3'
miRNA:   3'- cGCGGcCuUCGUUGUGGugCAGGAGc -5'
5312 3' -56 NC_001798.1 + 133754 0.68 0.85208
Target:  5'- cGCGCCcgcguGGggGCGcugcuugcGCACgCACG-CCUCc -3'
miRNA:   3'- -CGCGG-----CCuuCGU--------UGUG-GUGCaGGAGc -5'
5312 3' -56 NC_001798.1 + 1479 0.68 0.85208
Target:  5'- cGCGCCGGGcgccauGGCGucGC-CCGCGcCCgaggCGg -3'
miRNA:   3'- -CGCGGCCU------UCGU--UGuGGUGCaGGa---GC- -5'
5312 3' -56 NC_001798.1 + 52979 0.68 0.85208
Target:  5'- cGCGaCCGGGcugGGCGGCccGCCACGcCCa-- -3'
miRNA:   3'- -CGC-GGCCU---UCGUUG--UGGUGCaGGagc -5'
5312 3' -56 NC_001798.1 + 71911 0.69 0.810852
Target:  5'- gGCcCUGGAgGGCAucCACCccaACGUCCUCGc -3'
miRNA:   3'- -CGcGGCCU-UCGUu-GUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 102999 0.69 0.810852
Target:  5'- aCGCCGGggGCccagguGCGCCcggccagcGCGagCUCGg -3'
miRNA:   3'- cGCGGCCuuCGu-----UGUGG--------UGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 108867 0.69 0.810852
Target:  5'- gGCGuUCGGguGCGACGCCGCG--CUCGu -3'
miRNA:   3'- -CGC-GGCCuuCGUUGUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 111062 0.69 0.810852
Target:  5'- cGCGCCG--AGguACAUgACGUgCUCGg -3'
miRNA:   3'- -CGCGGCcuUCguUGUGgUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 39899 0.69 0.810852
Target:  5'- cGgGCCGGggGaccuuugggAACGCCGCGUCgaUGg -3'
miRNA:   3'- -CgCGGCCuuCg--------UUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 44401 0.69 0.810852
Target:  5'- uGgGCCGGGAGCAAUggggucccgcgGCCcaggGCGUCUUgGa -3'
miRNA:   3'- -CgCGGCCUUCGUUG-----------UGG----UGCAGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.