miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 140814 0.69 0.793195
Target:  5'- gGC-CCGGAA-CGACAUCacguACGUCCUCa -3'
miRNA:   3'- -CGcGGCCUUcGUUGUGG----UGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 44401 0.69 0.810852
Target:  5'- uGgGCCGGGAGCAAUggggucccgcgGCCcaggGCGUCUUgGa -3'
miRNA:   3'- -CgCGGCCUUCGUUG-----------UGG----UGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 120497 0.69 0.814309
Target:  5'- gGUGCCGGAGGCGcgcguguuggccgugAaCGCCGgGUCCa-- -3'
miRNA:   3'- -CGCGGCCUUCGU---------------U-GUGGUgCAGGagc -5'
5312 3' -56 NC_001798.1 + 39899 0.69 0.810852
Target:  5'- cGgGCCGGggGaccuuugggAACGCCGCGUCgaUGg -3'
miRNA:   3'- -CgCGGCCuuCg--------UUGUGGUGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 111062 0.69 0.810852
Target:  5'- cGCGCCG--AGguACAUgACGUgCUCGg -3'
miRNA:   3'- -CGCGGCcuUCguUGUGgUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 108867 0.69 0.810852
Target:  5'- gGCGuUCGGguGCGACGCCGCG--CUCGu -3'
miRNA:   3'- -CGC-GGCCuuCGUUGUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 102999 0.69 0.810852
Target:  5'- aCGCCGGggGCccagguGCGCCcggccagcGCGagCUCGg -3'
miRNA:   3'- cGCGGCCuuCGu-----UGUGG--------UGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 71911 0.69 0.810852
Target:  5'- gGCcCUGGAgGGCAucCACCccaACGUCCUCGc -3'
miRNA:   3'- -CGcGGCCU-UCGUu-GUGG---UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 111621 0.7 0.745755
Target:  5'- aGCcCCGGggGCGGCAgacUCGCGUCgggggcgCUCGg -3'
miRNA:   3'- -CGcGGCCuuCGUUGU---GGUGCAG-------GAGC- -5'
5312 3' -56 NC_001798.1 + 26189 0.7 0.746714
Target:  5'- gGCGCUGGAcGGCcGgGCCGCcG-CCUCGg -3'
miRNA:   3'- -CGCGGCCU-UCGuUgUGGUG-CaGGAGC- -5'
5312 3' -56 NC_001798.1 + 40166 0.7 0.746714
Target:  5'- cGUGUCGGAAGagaGugGCCGgGUCCgaaUCGa -3'
miRNA:   3'- -CGCGGCCUUCg--UugUGGUgCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 58149 0.7 0.746714
Target:  5'- gGCGCCGG-AGCccaAGCACCuGCGUCagCGa -3'
miRNA:   3'- -CGCGGCCuUCG---UUGUGG-UGCAGgaGC- -5'
5312 3' -56 NC_001798.1 + 99987 0.7 0.746714
Target:  5'- cGCGuCCGuGGAGCGcaucaAgACCACcUCCUCGa -3'
miRNA:   3'- -CGC-GGC-CUUCGU-----UgUGGUGcAGGAGC- -5'
5312 3' -56 NC_001798.1 + 20770 0.7 0.755295
Target:  5'- cCGCgGGGAGCGACggcgcccGCCGCGUaggucucccgCCUCa -3'
miRNA:   3'- cGCGgCCUUCGUUG-------UGGUGCA----------GGAGc -5'
5312 3' -56 NC_001798.1 + 31147 0.7 0.755295
Target:  5'- gGCGCgggggcggcggugCGGggGCGAC-CCGCGgaaCCUCc -3'
miRNA:   3'- -CGCG-------------GCCuuCGUUGuGGUGCa--GGAGc -5'
5312 3' -56 NC_001798.1 + 98622 0.7 0.756243
Target:  5'- cGCGCCucgGGcGGCGugGCCGCGaCCgUCGc -3'
miRNA:   3'- -CGCGG---CCuUCGUugUGGUGCaGG-AGC- -5'
5312 3' -56 NC_001798.1 + 149784 0.7 0.756243
Target:  5'- aGCGCCGGAcGCgGACGCgACGcUCC-Ca -3'
miRNA:   3'- -CGCGGCCUuCG-UUGUGgUGC-AGGaGc -5'
5312 3' -56 NC_001798.1 + 6675 0.7 0.760025
Target:  5'- -gGCCGGgcGCcgccuucguggacggGACACCAUGUCUUgGg -3'
miRNA:   3'- cgCGGCCuuCG---------------UUGUGGUGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 122304 0.7 0.765664
Target:  5'- uGCGCCaucacuacgGGAccaAGCAGCGCUuCGUCgUCGu -3'
miRNA:   3'- -CGCGG---------CCU---UCGUUGUGGuGCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 28064 0.7 0.737087
Target:  5'- cGCgGUCGaGAGCGcGCcgGCCGCGUCCUCGc -3'
miRNA:   3'- -CG-CGGCcUUCGU-UG--UGGUGCAGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.